Factsheet for HORVU5Hr1G081620.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G057630.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	HORVU6Hr1G057630.1	AT5G61380.1	20407420
AT5G24470.1	HORVU6Hr1G057630.1	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G320500.1	Wheat	nucleus	90.28	91.61
TraesCS5A01G320300.1	Wheat	nucleus	89.63	91.1
TraesCS5D01G326200.3	Wheat	nucleus	85.9	85.07
Os09t0532400-01	Rice	nucleus	67.59	66.93
EER99234	Sorghum	nucleus	66.13	64.76
Zm00001d006212_P002	Maize	nucleus	64.34	62.82
Zm00001d021291_P002	Maize	mitochondrion, plastid	65.48	59.5
Zm00001d016258_P001	Maize	cytosol	18.15	54.11
GSMUA_Achr9P24280_001	Banana	nucleus	42.63	39.37
Bra004507.1-P	Field mustard	nucleus	26.26	39.32
CDY41558	Canola	nucleus	26.26	39.32
AT2G46790.1	Thale cress	nucleus	28.69	37.82
GSMUA_Achr4P04970_001	Banana	nucleus	39.71	37.58
CDY59590	Canola	nucleus	28.85	36.55
CDX80047	Canola	nucleus	23.5	36.52
CDY48015	Canola	nucleus	26.58	35.57
Bra029407.1-P	Field mustard	nucleus	29.01	35.17
CDY05436	Canola	nucleus	28.69	35.05
CDY19831	Canola	nucleus	27.39	34.0
Bra036517.1-P	Field mustard	nucleus	27.39	34.0
Bra009768.1-P	Field mustard	nucleus	30.63	33.57
CDX87123	Canola	nucleus	27.71	33.53
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	30.15	33.33
CDX80448	Canola	nucleus	29.98	33.21
GSMUA_Achr4P05170_001	Banana	nucleus	40.52	32.68
VIT_15s0048g02540.t01	Wine grape	nucleus	33.87	32.61
KRH64297	Soybean	nucleus	35.01	31.26
VIT_16s0098g00900.t01	Wine grape	nucleus	34.85	31.25
Solyc03g081240.2.1	Tomato	nucleus	34.36	31.18
KRG97248	Soybean	nucleus	33.55	30.22
KRH53629	Soybean	nucleus	34.2	30.14
KRH68964	Soybean	nucleus	33.71	30.06
KRH47791	Soybean	nucleus	34.04	29.09
PGSC0003DMT400001574	Potato	nucleus	31.77	28.7
KRH06354	Soybean	nucleus	32.74	28.61
PGSC0003DMT400029402	Potato	nucleus	29.34	28.28
Solyc10g005030.2.1	Tomato	nucleus	29.01	27.75
CDX88107	Canola	plastid	30.63	27.16
HORVU4Hr1G057550.2	Barley	nucleus	28.53	23.19
HORVU2Hr1G013400.34	Barley	cytosol, nucleus, plastid	25.12	22.43
HORVU6Hr1G057630.1	Barley	nucleus	18.31	21.65
HORVU4Hr1G021000.7	Barley	cytosol, nucleus	19.77	21.25
CDY27522	Canola	nucleus	27.23	19.51
Bra040484.1-P	Field mustard	cytosol	23.66	17.72

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.12740	UniProt:A0A287S0F4	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G081620
EnsemblPlants:HORVU5Hr1G081620.4	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110
PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF11	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI000B470C43	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:565156800..565159905

Molecular Weight (calculated)

68639.2 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.772

Length

617 amino acids

Sequence
(BLAST)

001: RGQGQGGGVE EREVVDQDGR EEEVRRALPM MPVRVLLAEG DDSTRHVISA LLRKCGYHVS AASDGVKAWE LLKEKSFKID LVLTEVELPS MSGFLLLSTI
101: MEHDACKNIP VIMMSSNDAV SMVFKCMLKG AADFLVKPIR KNELRNLWQH VWRKQLANGE IDVQQIQQEE NVAEQHGRKT EATKAEHSTQ NVVRKNRECS
201: EQESDAQICC CSFAKTKYWY FFMQSSCTRS EPEAESKHTN SFLEFKQITE RQSSTDPKNT VENRDPENPS ENKRKKASTD IEVVHIIDDA PKPSTMEVDI
301: VRTNSKGNGD KWFSIPAHQL ELSLRRSDYG RSEDQEKNDT RTLNHSTASA FSLYNCRPVS SFGNAGDAQP CSTSATHVDP ANKNGNWAAP SQDKTHTSCH
401: PIRVVPLPAP VGGLTFDGQP FWSGAPVAPL LYPQSGPPIW NSRTPVSQKA DTQATSSQQK CQQNDPTEMD CQQTESTQLQ EVLPPPIANE KHLHVEIPSD
501: SNTQQVSPMT GESGSSTVLN NSGNSNALSG SACGSSSNRI TTPTEQCNAS DGATENPSME GLHHLSQREI ALNKFRLKRK ERCFEKKVRY QSRKLLAEQR
601: PRVKGQFVRQ DQSVQGS

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.