Factsheet for Bra029407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	Bra012964.1-P	AT5G61380.1	20407420
AT5G24470.1	Bra035933.1-P	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05436	Canola	nucleus	96.27	97.03
Bra036517.1-P	Field mustard	nucleus	75.64	77.46
Bra009768.1-P	Field mustard	nucleus	84.87	76.73
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	79.76	72.76
Bra004507.1-P	Field mustard	nucleus	32.42	40.05
Solyc03g081240.2.1	Tomato	nucleus	48.33	36.18
VIT_16s0098g00900.t01	Wine grape	nucleus	48.53	35.9
KRH64297	Soybean	nucleus	47.74	35.17
KRH53629	Soybean	nucleus	47.94	34.86
PGSC0003DMT400001574	Potato	nucleus	44.01	32.8
Bra020263.1-P	Field mustard	nucleus	7.86	32.52
EER99234	Sorghum	nucleus	37.33	30.16
Zm00001d006212_P002	Maize	nucleus	37.13	29.91
Os09t0532400-01	Rice	nucleus	35.76	29.21
TraesCS5B01G320500.1	Wheat	nucleus	34.77	29.11
HORVU5Hr1G081620.4	Barley	nucleus	35.17	29.01
TraesCS5A01G320300.1	Wheat	nucleus	34.58	29.0
Bra002512.1-P	Field mustard	nucleus	27.11	28.51
GSMUA_Achr9P24280_001	Banana	nucleus	36.54	27.84
Zm00001d021291_P002	Maize	mitochondrion, plastid	36.74	27.54
GSMUA_Achr4P04970_001	Banana	nucleus	34.77	27.15
TraesCS5D01G326200.3	Wheat	nucleus	31.83	26.0
Zm00001d016258_P001	Maize	cytosol	10.02	24.64
GSMUA_Achr4P05170_001	Banana	nucleus	34.38	22.88
Bra035933.1-P	Field mustard	nucleus	21.81	21.81
Bra009565.1-P	Field mustard	nucleus	29.47	21.31
Bra012964.1-P	Field mustard	nucleus	22.2	19.62
Bra028861.1-P	Field mustard	nucleus	23.77	18.97
Bra040484.1-P	Field mustard	cytosol	30.26	18.69

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	ProteinID:AAO27295	ProteinID:AAO27295.1	EMBL:AY185117	EnsemblPlantsGene:Bra029407
EnsemblPlants:Bra029407.1	EnsemblPlants:Bra029407.1-P	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402
UniProt:M4EKU0	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0002547223	SEG:seg

Description

AT5G24470 (E=5e-103) APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator

Coordinates

chrA02:+:25331938..25333977

Molecular Weight (calculated)

57091.7 Da

IEP (calculated)

7.828

GRAVY (calculated)

-0.823

Length

509 amino acids

Sequence
(BLAST)

001: MQEMSDEVVE VTVVDKASEA DGGKPTRRRM RRKDAAEGGD GLMKWERFLP KISLRVLLVE ADDSTRQIIS ALLRKCSYRV AAVADGLKAW EMLKGNPQSV
101: DLILTEVDLP SISGYALLTL IMEHDICKNI PLIMMSTQDS VNTVYKCMLK GASDYLVKPL RRNELRNLWQ HVWRRRQNAP GSFPLDESVG HEKPDGASAN
201: NSTSNQENAF ERDQRPVIGN GGDDQSSCSR PEMQGESADV EDSTKEAIDF MGASFRRNTQ RNREESVARY ESLIELDLSL RRPNTCENQS SGEKPSLHPS
301: SASAFTRYVH RPQYSASPLV LDQRKNVAAS EDDNINQYNS SEPPPNAPRR NEVSFNNRAD SSQMNSWPGQ GSYPTPVPIN SIQFNTAAMA PASLSPSPSS
401: VSPHEYSSMF HPFNGSMDAE ERRHISSTTE HSAIDNHCSA NSSSVGRTQQ SLQREAALNK FRMKRKDRCF DKKVRYESRK KLAEQRPRIK GQFVRQVQST
501: ETSTQEAPQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.