CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	CDX87210	AT5G61380.1	20407420
AT5G24470.1	CDY02151	AT5G61380.1	20407420
AT5G24470.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029407.1-P	Field mustard	nucleus	97.03	96.27
CDY59590	Canola	nucleus	86.53	89.73
CDX87123	Canola	nucleus	78.81	78.04
CDY19831	Canola	nucleus	75.45	76.66
CDX80448	Canola	nucleus	83.76	75.94
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	79.41	71.86
CDX88107	Canola	plastid	84.55	61.35
CDY41558	Canola	nucleus	32.48	39.81
CDX80047	Canola	nucleus	29.7	37.78
CDY48015	Canola	nucleus	34.26	37.53
Solyc03g081240.2.1	Tomato	nucleus	48.91	36.32
VIT_16s0098g00900.t01	Wine grape	nucleus	48.32	35.47
KRH64297	Soybean	nucleus	47.52	34.73
KRH53629	Soybean	nucleus	47.52	34.29
CDY09224	Canola	nucleus	8.51	33.59
PGSC0003DMT400001574	Potato	nucleus	44.75	33.09
EER99234	Sorghum	nucleus	37.43	30.0
CDX80201	Canola	nucleus	27.72	29.72
Zm00001d006212_P002	Maize	nucleus	36.83	29.43
TraesCS5B01G320500.1	Wheat	nucleus	34.65	28.78
Os09t0532400-01	Rice	nucleus	35.45	28.73
HORVU5Hr1G081620.4	Barley	nucleus	35.05	28.69
TraesCS5A01G320300.1	Wheat	nucleus	34.46	28.67
CDY31578	Canola	nucleus	27.72	28.51
GSMUA_Achr9P24280_001	Banana	nucleus	36.63	27.69
GSMUA_Achr4P04970_001	Banana	nucleus	35.25	27.3
Zm00001d021291_P002	Maize	mitochondrion, plastid	36.44	27.1
TraesCS5D01G326200.3	Wheat	nucleus	32.08	26.0
Zm00001d016258_P001	Maize	cytosol	10.1	24.64
GSMUA_Achr4P05170_001	Banana	nucleus	34.46	22.75
CDX87210	Canola	nucleus	21.58	21.76
CDY10422	Canola	nucleus	29.9	21.54
CDX70344	Canola	nucleus	29.9	21.45
CDY55688	Canola	nucleus	29.11	21.34
CDY04868	Canola	nucleus	28.91	21.07
CDY02151	Canola	nucleus	21.98	20.29
CDY27522	Canola	nucleus	34.06	19.98
CDY64140	Canola	nucleus	22.18	19.55

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078EW15	InterPro:CCT_domain	EnsemblPlants:CDY05436	ProteinID:CDY05436
ProteinID:CDY05436.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00120342001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE5877	SEG:seg

Description

BnaA02g32550D

Coordinates

chrLK031962:-:77797..79983

Molecular Weight (calculated)

56405.9 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.820

Length

505 amino acids

Sequence
(BLAST)

001: MQAMSDEVVE VTVVDKASEA DGGKSTRRRM RRKDADGLMK WERFLPKISL RVLLVEADDS TRQIVSALLR KCSYRVAAVA DGLKAWEMLK GNPQSVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPLIM MSTQDSVNTV YKCMLKGASD YLVKPLRRNE LRNLWQHVWR RRQNAPGSFP LDESVGHEKP DGASANNSTS
201: NQENAFERDQ RPVIGNGGDD QSSCSRPEMQ GESADVEDST KEAIDFMGAS FRRNTQRNRE ESVARYESLI ELDLSLRRPN TCENQSSGEK PSLHPSSASA
301: FTRYVHRPQC SVSPLVSNQR KNVAASEDDN NNQYNSSEPP PNAPRRNEAS FNNRADSSQM NSWPGQGSSP TPVPINSIQF NTAAMAPASL SPSPSSVSPH
401: EYSSMFHPFN GSMDAEERRH ISSATEHSGI GNHCSANSSS VGRTQQSLQR EAALNKFRMK RKDRCFDKKV RYESRKKLAE QRPRIKGQLV RHVQSTETST
501: QEAPQ

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.