CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73279
CDX79527
CDX80064
CDX80448
CDX83349
CDX84689
CDX86852
CDX87123
CDX88107
CDX93029
CDX99562
CDY05436
CDY15121
CDY17173
CDY19831
CDY23739
CDY37724
CDY50911
CDY59590
CDY66254
CDY67299

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	CDX73279	AT1G33470.1	21798944
AT5G61380.1	CDX79527	AT2G33410.1	21798944
AT5G61380.1	CDX84689	AT2G33410.1	21798944
AT5G61380.1	CDY17173	AT2G33410.1	21798944
AT5G61380.1	CDY23739	AT2G33410.1	21798944
AT5G61380.1	CDY37724	AT2G33410.1	21798944
AT5G61380.1	CDY67299	AT2G33410.1	21798944
AT5G61380.1	CDX80064	AT2G46970.1	11828029
AT5G61380.1	CDX83349	AT2G46970.1	11828029
AT5G61380.1	CDY50911	AT2G46970.1	11828029
AT5G61380.1	CDY66254	AT2G46970.1	11828029
AT5G61380.1	CDX86852	AT3G16980.1	21798944
AT5G61380.1	CDX99562	AT3G16980.1	21798944
AT5G61380.1	CDX93029	AT3G24650.1	10743655
AT5G61380.1	CDY15121	AT3G24650.1	10743655
AT5G61380.1	CDX80448	AT5G24470.1	20407420
AT5G61380.1	CDX87123	AT5G24470.1	20407420
AT5G61380.1	CDX88107	AT5G24470.1	20407420
AT5G61380.1	CDY05436	AT5G24470.1	20407420
AT5G61380.1	CDY19831	AT5G24470.1	20407420
AT5G61380.1	CDY59590	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035933.1-P	Field mustard	nucleus	90.62	89.19
CDY64140	Canola	nucleus	86.03	75.22
CDY02151	Canola	nucleus	81.64	74.77
AT5G61380.1	Thale cress	nucleus	86.43	70.06
KRH54582	Soybean	nucleus	56.89	51.08
KRH63298	Soybean	nucleus	57.09	51.07
VIT_17s0000g06570.t01	Wine grape	nucleus	56.09	51.0
Solyc03g115770.2.1	Tomato	nucleus	55.89	50.72
KRH56889	Soybean	nucleus	58.08	50.61
PGSC0003DMT400050252	Potato	nucleus	55.49	50.45
KRH03510	Soybean	nucleus	57.88	50.09
Solyc06g069690.2.1	Tomato	nucleus	49.1	49.0
PGSC0003DMT400083086	Potato	nucleus	52.89	48.27
GSMUA_Achr9P19550_001	Banana	nucleus	42.71	40.61
Os02t0618200-01	Rice	nucleus	40.92	39.58
TraesCS6B01G253900.1	Wheat	nucleus	40.72	39.53
GSMUA_Achr2P04570_001	Banana	nucleus	43.11	39.34
GSMUA_Achr10P...	Banana	nucleus	42.32	39.11
HORVU6Hr1G057630.1	Barley	nucleus	40.72	39.08
EES05438	Sorghum	nucleus	40.52	38.74
Zm00001d017241_P002	Maize	nucleus	39.92	38.68
Zm00001d051114_P001	Maize	nucleus	40.32	37.0
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	40.92	36.48
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	40.92	36.22
Zm00001d003811_P001	Maize	cytosol	20.96	32.61
Zm00001d018818_P001	Maize	cytosol	18.56	30.59
Zm00001d043140_P001	Maize	cytosol	18.56	30.59
Zm00001d044406_P001	Maize	cytosol	17.96	29.61
CDY09224	Canola	nucleus	6.39	25.0
CDY41558	Canola	nucleus	19.56	23.79
CDY59590	Canola	nucleus	21.96	22.59
CDY19831	Canola	nucleus	22.16	22.33
CDY48015	Canola	nucleus	19.96	21.69
CDY05436	Canola	nucleus	21.76	21.58
CDX87123	Canola	nucleus	21.56	21.18
CDX80201	Canola	nucleus	19.56	20.81
Zm00001d005366_P001	Maize	cytosol	22.36	20.66
CDX80047	Canola	nucleus	16.37	20.65
CDY31578	Canola	nucleus	20.16	20.57
CDX80448	Canola	nucleus	22.55	20.29
CDY10422	Canola	nucleus	22.95	16.41
CDY55688	Canola	nucleus	22.36	16.26
CDX88107	Canola	plastid	22.55	16.24
CDX70344	Canola	nucleus	22.75	16.19
CDY04868	Canola	nucleus	22.36	16.16
CDY27522	Canola	nucleus	21.16	12.31

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	GO:A0A078DDB4	InterPro:CCT_domain	EnsemblPlants:CDX87210	ProteinID:CDX87210
ProteinID:CDX87210.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00146143001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF35	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE28D2	SEG:seg

Description

BnaC09g05250D

Coordinates

chrLK031849:+:1189724..1191950

Molecular Weight (calculated)

56945.2 Da

IEP (calculated)

8.152

GRAVY (calculated)

-0.869

Length

501 amino acids

Sequence
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSKS LGDVSTLLSQ CSYQVTSAKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MFSYDFDLVG SDPSDPNTNS TNLFSDDTDD RTIRSQRGAL SHQEKECPVA
201: NGADGTATSA PPPPLNHLPR SHHEPNPGDF SSVPKKSRLK IGESSAFFTY VKSTVLATNL MAEKLQVVAN EVINNTKQTR RGRETEKNYS QGENLQNGGV
301: TELHGRSYQE RNMNTSQVAM NRSKDSSQVA AQNAYPYYMQ GVMNQVMMQS AAMMPPQYGH HQHPHYPPNH LNGLSGVPYY HHHPMNTSLQ HNQMSQNGQM
401: SMVHYHPPSN EVRVSKLDRR EEALLKFRRK RNQRCFDKKI RYVNRKKLAE RRPRVKGQFV RKVNGVNVDL NGQPDYDEEE EEDEEEEENR DSSPQDDAQG
501: T

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.