Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY06428 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY27533 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY37307 | AT3G21215.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17173 | Canola | nucleus | 95.8 | 96.82 |
| Bra005496.1-P | Field mustard | nucleus | 95.54 | 96.81 |
| AT2G33410.1 | Thale cress | nucleus | 90.81 | 85.64 |
| CDX79527 | Canola | nucleus | 90.55 | 84.98 |
| CDY23739 | Canola | nucleus | 85.3 | 84.86 |
| CDX84689 | Canola | nucleus | 90.55 | 84.56 |
| CDY37724 | Canola | nucleus | 70.08 | 82.66 |
| CDY12068 | Canola | nucleus | 56.43 | 60.06 |
| CDX90262 | Canola | nucleus | 57.74 | 57.59 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 66.67 | 54.74 |
| KRH07772 | Soybean | cytosol | 13.65 | 53.06 |
| Solyc09g090520.2.1 | Tomato | nucleus | 64.57 | 51.79 |
| Solyc03g005680.2.1 | Tomato | nucleus | 58.01 | 51.76 |
| PGSC0003DMT400044195 | Potato | nucleus | 64.3 | 51.58 |
| PGSC0003DMT400035000 | Potato | nucleus | 59.32 | 51.13 |
| KRG92276 | Soybean | endoplasmic reticulum | 63.25 | 50.63 |
| KRH34534 | Soybean | nucleus | 62.2 | 50.32 |
| KXG38359 | Sorghum | nucleus | 56.17 | 47.24 |
| Zm00001d032739_P001 | Maize | nucleus | 54.86 | 47.18 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 55.91 | 47.12 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 55.91 | 46.92 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 55.91 | 46.92 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 46.46 | 43.81 |
| Zm00001d014058_P002 | Maize | plastid | 54.86 | 43.36 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 55.91 | 41.76 |
| CDY41059 | Canola | nucleus | 37.8 | 33.72 |
| CDX94301 | Canola | nucleus | 38.85 | 33.48 |
| CDY26229 | Canola | nucleus | 32.55 | 33.42 |
| CDY48318 | Canola | nucleus | 32.28 | 33.06 |
| CDY50131 | Canola | nucleus | 32.81 | 32.72 |
| CDY46690 | Canola | nucleus | 36.75 | 32.71 |
| CDY07975 | Canola | nucleus | 40.42 | 32.7 |
| CDX74030 | Canola | nucleus | 40.42 | 32.63 |
| CDX89316 | Canola | endoplasmic reticulum | 38.06 | 32.44 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 35.17 | 32.29 |
| CDY36753 | Canola | nucleus | 36.75 | 32.18 |
| CDY11989 | Canola | nucleus | 36.48 | 32.18 |
| CDY66272 | Canola | nucleus | 40.94 | 31.9 |
| CDX77783 | Canola | nucleus | 35.43 | 31.76 |
| CDY35966 | Canola | nucleus | 40.94 | 31.58 |
| CDX92807 | Canola | nucleus | 37.27 | 31.56 |
| CDY22136 | Canola | nucleus | 40.16 | 31.48 |
| CDY24201 | Canola | nucleus | 29.66 | 31.22 |
| CDY46689 | Canola | nucleus | 37.8 | 31.1 |
| CDY43360 | Canola | nucleus | 29.4 | 30.94 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 32.81 | 30.41 |
| CDY28918 | Canola | mitochondrion | 36.22 | 28.51 |
| CDY51790 | Canola | cytosol | 7.87 | 28.04 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 25.46 | 28.03 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 26.51 | 27.82 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.14 | 27.68 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 25.98 | 27.2 |
| CDX75170 | Canola | extracellular | 11.55 | 26.99 |
| CDY69852 | Canola | cytosol | 26.25 | 26.18 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 24.93 | 26.17 |
| CDY42724 | Canola | cytosol | 25.98 | 26.12 |
| CDY25957 | Canola | nucleus | 37.53 | 25.86 |
| CDY36357 | Canola | nucleus | 32.02 | 22.51 |
| CDX69279 | Canola | nucleus | 13.91 | 22.46 |
| CDY42577 | Canola | nucleus | 32.02 | 22.39 |
| CDX73279 | Canola | cytosol | 13.91 | 21.9 |
| CDY31508 | Canola | nucleus | 14.17 | 21.6 |
| CDY69197 | Canola | nucleus | 12.6 | 21.33 |
| CDY31859 | Canola | nucleus | 13.39 | 21.16 |
| CDY04769 | Canola | nucleus | 13.12 | 21.1 |
| CDY33653 | Canola | nucleus | 13.91 | 20.95 |
| CDX96615 | Canola | nucleus | 13.65 | 20.63 |
| CDY40554 | Canola | nucleus | 35.43 | 20.58 |
| CDY01349 | Canola | nucleus | 12.86 | 20.33 |
| CDY29496 | Canola | nucleus | 13.91 | 20.31 |
| CDY55846 | Canola | nucleus | 20.73 | 19.7 |
| CDX88283 | Canola | nucleus | 14.44 | 19.64 |
| CDY24106 | Canola | nucleus | 21.0 | 19.37 |
| CDY02889 | Canola | nucleus | 11.02 | 19.35 |
| CDY25759 | Canola | nucleus | 12.6 | 19.28 |
| CDY26001 | Canola | nucleus | 20.47 | 19.16 |
| CDY41556 | Canola | nucleus | 14.44 | 18.97 |
| CDY25867 | Canola | nucleus | 19.95 | 18.77 |
| CDY27523 | Canola | nucleus | 14.96 | 17.65 |
| CDX73451 | Canola | cytosol | 11.55 | 17.6 |
| CDY48016 | Canola | nucleus | 14.96 | 17.48 |
| CDX80046 | Canola | nucleus | 14.44 | 17.41 |
| CDY41557 | Canola | nucleus | 14.44 | 17.41 |
| CDX87594 | Canola | nucleus | 14.44 | 17.19 |
| CDY64698 | Canola | nucleus | 11.55 | 16.86 |
| CDX69277 | Canola | mitochondrion | 8.14 | 16.67 |
| CDX68024 | Canola | nucleus | 12.34 | 16.61 |
| CDX78261 | Canola | nucleus | 11.29 | 16.6 |
| CDX88432 | Canola | nucleus | 12.34 | 16.55 |
| CDX87460 | Canola | nucleus | 12.34 | 16.49 |
| CDX79253 | Canola | nucleus | 12.07 | 16.43 |
| CDY21356 | Canola | nucleus | 12.34 | 16.21 |
| CDY46642 | Canola | nucleus | 12.07 | 15.92 |
| CDY13782 | Canola | nucleus | 12.34 | 15.31 |
| CDX76950 | Canola | nucleus | 12.34 | 15.26 |
| CDY67263 | Canola | nucleus | 13.12 | 15.24 |
| CDY27186 | Canola | nucleus | 17.59 | 14.92 |
| CDX72106 | Canola | nucleus | 17.59 | 14.73 |
| CDY06947 | Canola | nucleus | 16.54 | 14.65 |
| CDY57580 | Canola | nucleus | 16.27 | 14.0 |
| CDY00446 | Canola | nucleus | 12.34 | 13.82 |
| CDY08023 | Canola | nucleus | 12.6 | 13.33 |
| CDY13339 | Canola | mitochondrion | 5.77 | 13.1 |
| CDY24657 | Canola | nucleus | 11.55 | 12.94 |
| CDX74070 | Canola | cytosol | 12.07 | 12.78 |
| CDY05301 | Canola | nucleus | 11.55 | 12.54 |
| CDY21399 | Canola | mitochondrion | 4.72 | 12.41 |
| CDY15850 | Canola | nucleus | 11.81 | 12.16 |
| CDX76015 | Canola | nucleus | 9.71 | 12.13 |
| CDY47382 | Canola | golgi, plastid | 11.55 | 10.58 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JKM0 | UniProt:A0A078JKM0 | EnsemblPlants:CDY67299 | ProteinID:CDY67299 |
| ProteinID:CDY67299.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00060604001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF13C8 | SEG:seg |
Description
BnaCnng54370DBnaCnng54370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKM0]
Coordinates
chrLK035953:+:738..2410
Molecular Weight (calculated)
39249.7 Da
IEP (calculated)
6.256
GRAVY (calculated)
-0.683
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDQGKLFI GGISWETDEN ILREYFSNFG EVLQVTVMRD KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSRDEQSPAG RQGGFNGSRS
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK TYHDLSGKQV EVKRALPKDA NPGMAGGGGR
201: SGGGFPGYGG SGGSGYESRV DSNRYMPPQN AGSGYPPYGY GGFGGGYGNP SGAPYGNPGG PGAGFGSGPR PSWEGQAPSG YGNNVGYGNA AAAPPWGGSG
301: PGSAVMGQGG ASAGYGSQGY GYGGNDSSYG TQSGYGAVGG RPNSHGGGYA DVSDGSGGYG NHQVNGQAGY GGGYGRQAQQ Q
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK TYHDLSGKQV EVKRALPKDA NPGMAGGGGR
201: SGGGFPGYGG SGGSGYESRV DSNRYMPPQN AGSGYPPYGY GGFGGGYGNP SGAPYGNPGG PGAGFGSGPR PSWEGQAPSG YGNNVGYGNA AAAPPWGGSG
301: PGSAVMGQGG ASAGYGSQGY GYGGNDSSYG TQSGYGAVGG RPNSHGGGYA DVSDGSGGYG NHQVNGQAGY GGGYGRQAQQ Q
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.