Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35966 | Canola | nucleus | 96.73 | 95.75 |
| Bra029681.1-P | Field mustard | nucleus | 97.55 | 95.21 |
| AT3G07810.2 | Thale cress | nucleus | 90.18 | 89.09 |
| CDY22136 | Canola | nucleus | 88.14 | 88.68 |
| CDX74030 | Canola | nucleus | 85.48 | 88.56 |
| CDY07975 | Canola | nucleus | 84.66 | 87.9 |
| GSMUA_Achr10P... | Banana | nucleus | 52.76 | 58.64 |
| GSMUA_Achr10P... | Banana | nucleus | 54.81 | 58.26 |
| Os11t0637700-01 | Rice | plasma membrane | 53.78 | 56.32 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 53.17 | 56.16 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 53.17 | 56.16 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 53.17 | 56.16 |
| TraesCSU01G068500.1 | Wheat | nucleus | 52.76 | 55.72 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 55.83 | 54.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 48.88 | 54.07 |
| Zm00001d007772_P001 | Maize | nucleus | 48.26 | 52.56 |
| Zm00001d019079_P001 | Maize | cytosol | 47.44 | 51.79 |
| EER98147 | Sorghum | nucleus | 47.65 | 51.43 |
| EER96020 | Sorghum | nucleus | 47.44 | 50.99 |
| Os07t0584500-01 | Rice | nucleus | 49.08 | 50.85 |
| Zm00001d019084_P002 | Maize | nucleus | 46.83 | 50.44 |
| EER97452 | Sorghum | nucleus | 48.26 | 50.11 |
| CDX94301 | Canola | nucleus | 45.19 | 50.0 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 48.06 | 49.89 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 47.85 | 49.79 |
| CDY36753 | Canola | nucleus | 44.17 | 49.66 |
| CDX92807 | Canola | nucleus | 45.4 | 49.33 |
| CDY11989 | Canola | nucleus | 43.15 | 48.84 |
| CDX77783 | Canola | nucleus | 42.33 | 48.71 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 41.31 | 48.67 |
| CDY41059 | Canola | nucleus | 42.33 | 48.48 |
| CDY50131 | Canola | nucleus | 37.63 | 48.17 |
| Zm00001d006704_P002 | Maize | nucleus | 47.65 | 48.14 |
| CDX89316 | Canola | endoplasmic reticulum | 43.97 | 48.1 |
| CDY46689 | Canola | nucleus | 45.19 | 47.73 |
| CDY46690 | Canola | nucleus | 41.1 | 46.96 |
| OQU83904 | Sorghum | nucleus | 41.31 | 44.89 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.42 | 44.53 |
| Zm00001d019086_P001 | Maize | nucleus | 48.06 | 44.17 |
| TraesCS2A01G190400.1 | Wheat | plastid | 47.65 | 43.88 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 47.65 | 43.07 |
| CDY28918 | Canola | mitochondrion | 42.13 | 42.56 |
| CDY23739 | Canola | nucleus | 32.92 | 42.04 |
| CDY12068 | Canola | nucleus | 30.06 | 41.06 |
| CDY67299 | Canola | nucleus | 31.9 | 40.94 |
| CDX79527 | Canola | nucleus | 33.95 | 40.89 |
| CDY17173 | Canola | nucleus | 31.49 | 40.85 |
| CDX84689 | Canola | nucleus | 33.54 | 40.2 |
| CDX90262 | Canola | nucleus | 31.08 | 39.79 |
| CDY37724 | Canola | nucleus | 25.97 | 39.32 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 53.78 | 38.73 |
| CDX75170 | Canola | extracellular | 12.68 | 38.04 |
| CDY25957 | Canola | nucleus | 41.92 | 37.07 |
| CDY24201 | Canola | nucleus | 26.38 | 35.64 |
| CDY43360 | Canola | nucleus | 26.38 | 35.64 |
| CDY26229 | Canola | nucleus | 25.15 | 33.15 |
| CDY48318 | Canola | nucleus | 25.15 | 33.06 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 23.72 | 31.96 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.72 | 31.87 |
| CDY40554 | Canola | nucleus | 41.72 | 31.1 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 21.88 | 30.92 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.9 | 30.85 |
| CDY51790 | Canola | cytosol | 6.34 | 28.97 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 6.54 | 28.57 |
| CDY42724 | Canola | cytosol | 20.65 | 26.65 |
| CDY42577 | Canola | nucleus | 29.45 | 26.42 |
| CDY36357 | Canola | nucleus | 29.04 | 26.2 |
| CDY69852 | Canola | cytosol | 20.45 | 26.18 |
| CDX69279 | Canola | nucleus | 11.25 | 23.31 |
| CDX73451 | Canola | cytosol | 11.45 | 22.4 |
| CDY31859 | Canola | nucleus | 10.63 | 21.58 |
| CDY69197 | Canola | nucleus | 9.82 | 21.33 |
| CDX78261 | Canola | nucleus | 11.25 | 21.24 |
| CDY02889 | Canola | nucleus | 9.41 | 21.2 |
| CDY31508 | Canola | nucleus | 10.63 | 20.8 |
| CDY04769 | Canola | nucleus | 10.02 | 20.68 |
| CDX73279 | Canola | cytosol | 10.22 | 20.66 |
| CDY25867 | Canola | nucleus | 16.97 | 20.49 |
| CDY55846 | Canola | nucleus | 16.77 | 20.45 |
| CDY01349 | Canola | nucleus | 10.02 | 20.33 |
| CDY25759 | Canola | nucleus | 10.22 | 20.08 |
| CDX96615 | Canola | nucleus | 10.22 | 19.84 |
| CDY33653 | Canola | nucleus | 10.22 | 19.76 |
| CDY29496 | Canola | nucleus | 10.43 | 19.54 |
| CDY64698 | Canola | nucleus | 10.43 | 19.54 |
| CDY26001 | Canola | nucleus | 16.16 | 19.41 |
| CDY24106 | Canola | nucleus | 16.36 | 19.37 |
| CDX79253 | Canola | nucleus | 10.63 | 18.57 |
| CDX88283 | Canola | nucleus | 10.63 | 18.57 |
| CDX88432 | Canola | nucleus | 10.63 | 18.31 |
| CDY41556 | Canola | nucleus | 10.84 | 18.28 |
| CDX87460 | Canola | nucleus | 10.43 | 17.89 |
| CDX80046 | Canola | nucleus | 11.45 | 17.72 |
| CDX68024 | Canola | nucleus | 10.22 | 17.67 |
| CDY27523 | Canola | nucleus | 11.66 | 17.65 |
| CDY48016 | Canola | nucleus | 11.66 | 17.48 |
| CDY41557 | Canola | nucleus | 11.25 | 17.41 |
| CDX76015 | Canola | nucleus | 10.84 | 17.38 |
| CDY21356 | Canola | nucleus | 10.22 | 17.24 |
| CDX69277 | Canola | mitochondrion | 6.54 | 17.2 |
| CDY06947 | Canola | nucleus | 14.93 | 16.98 |
| CDY46642 | Canola | nucleus | 10.02 | 16.95 |
| CDX87594 | Canola | nucleus | 11.04 | 16.88 |
| CDY57580 | Canola | nucleus | 15.13 | 16.7 |
| CDY13782 | Canola | nucleus | 10.43 | 16.61 |
| CDY67263 | Canola | nucleus | 11.04 | 16.46 |
| CDY27186 | Canola | nucleus | 14.93 | 16.26 |
| CDX76950 | Canola | nucleus | 10.22 | 16.23 |
| CDX72106 | Canola | nucleus | 14.72 | 15.82 |
| CDY08023 | Canola | nucleus | 11.45 | 15.56 |
| CDX74070 | Canola | cytosol | 11.04 | 15.0 |
| CDY15850 | Canola | nucleus | 11.25 | 14.86 |
| CDY00446 | Canola | nucleus | 10.02 | 14.41 |
| CDY21399 | Canola | mitochondrion | 4.09 | 13.79 |
| CDY24657 | Canola | nucleus | 9.2 | 13.24 |
| CDY05301 | Canola | nucleus | 9.41 | 13.11 |
| CDY47382 | Canola | golgi, plastid | 10.22 | 12.02 |
| CDY13339 | Canola | mitochondrion | 4.09 | 11.9 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JLP2 | UniProt:A0A078JLP2 | EnsemblPlants:CDY66272 | ProteinID:CDY66272 |
| ProteinID:CDY66272.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00053304001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EEC231 | SEG:seg | : | : | : | : |
Description
BnaC05g52200DBnaC05g52200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLP2]
Coordinates
chrLK035179:-:2107..5201
Molecular Weight (calculated)
50978.5 Da
IEP (calculated)
8.664
GRAVY (calculated)
-0.554
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDNGKLFI GGISWDTNEE RLKEYFSTFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EFVITEKHHI DGRLVEAKKA VPRDDQNMVT RSNSSSIQGS
101: PGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDTEE AVDKVLLKTF HELNGKMVEV KRAVPKEMSP GPARSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PGAVGGYGLR MDGRFSPVGA GRSGFANFGS GYGMNMNFDQ GLPTGFTGGN GNLDYGRGMS PYYIGNTNRF GPGPAVGCEG
301: GGGGNSSFFS SVTRNLWGNN GGLSYNNNNN NAANSNSNSN TYMGGGGSTS GNNNTLSGGP FGNWGAPGGG GGGNNAVGNE NAKFGYGGNG ESGFGYAARS
401: IGPSKAAPSS SFSSASAGYD GAGLAEFYGN GAVYSDPTWR SPTPEAEGPA SFSYGIGGGP SSDVSARSSS PGYVGSYKRQ PNRGEAPSR
101: PGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDTEE AVDKVLLKTF HELNGKMVEV KRAVPKEMSP GPARSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PGAVGGYGLR MDGRFSPVGA GRSGFANFGS GYGMNMNFDQ GLPTGFTGGN GNLDYGRGMS PYYIGNTNRF GPGPAVGCEG
301: GGGGNSSFFS SVTRNLWGNN GGLSYNNNNN NAANSNSNSN TYMGGGGSTS GNNNTLSGGP FGNWGAPGGG GGGNNAVGNE NAKFGYGGNG ESGFGYAARS
401: IGPSKAAPSS SFSSASAGYD GAGLAEFYGN GAVYSDPTWR SPTPEAEGPA SFSYGIGGGP SSDVSARSSS PGYVGSYKRQ PNRGEAPSR
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.