Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64698 | Canola | nucleus | 91.24 | 75.86 |
| CDX73451 | Canola | cytosol | 83.87 | 72.8 |
| CDX78261 | Canola | nucleus | 84.33 | 70.66 |
| AT3G54770.1 | Thale cress | nucleus | 80.18 | 66.67 |
| Solyc04g049920.2.1 | Tomato | nucleus | 49.31 | 44.4 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 50.23 | 44.13 |
| PGSC0003DMT400027411 | Potato | nucleus | 51.15 | 43.7 |
| CDY51790 | Canola | cytosol | 20.28 | 41.12 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 20.28 | 39.29 |
| KRH06306 | Soybean | nucleus | 45.62 | 36.8 |
| KRH47731 | Soybean | nucleus | 45.16 | 36.7 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 43.32 | 33.69 |
| CDY31859 | Canola | nucleus | 36.87 | 33.2 |
| CDX96615 | Canola | nucleus | 38.25 | 32.94 |
| CDY01349 | Canola | nucleus | 35.94 | 32.37 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 41.47 | 32.26 |
| GSMUA_Achr11P... | Banana | nucleus | 39.17 | 32.08 |
| CDY69197 | Canola | nucleus | 33.18 | 32.0 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 43.32 | 31.65 |
| CDY33653 | Canola | nucleus | 36.87 | 31.62 |
| CDY31508 | Canola | nucleus | 36.41 | 31.6 |
| CDY04769 | Canola | nucleus | 34.1 | 31.22 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 42.86 | 31.1 |
| CDY29496 | Canola | nucleus | 37.33 | 31.03 |
| CDX88283 | Canola | nucleus | 39.63 | 30.71 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 42.4 | 30.56 |
| CDX73279 | Canola | cytosol | 33.18 | 29.75 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 41.94 | 29.35 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 41.94 | 29.35 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 41.47 | 29.03 |
| CDY25759 | Canola | nucleus | 33.18 | 28.92 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 42.4 | 28.84 |
| CDX79253 | Canola | nucleus | 35.02 | 27.14 |
| CDX88432 | Canola | nucleus | 35.02 | 26.76 |
| CDX87460 | Canola | nucleus | 35.02 | 26.67 |
| CDX87594 | Canola | nucleus | 39.17 | 26.56 |
| CDY41556 | Canola | nucleus | 35.48 | 26.55 |
| CDX68024 | Canola | nucleus | 34.56 | 26.5 |
| CDY46642 | Canola | nucleus | 35.02 | 26.3 |
| CDY21356 | Canola | nucleus | 35.02 | 26.21 |
| CDY27523 | Canola | nucleus | 36.41 | 24.46 |
| CDX80046 | Canola | nucleus | 35.48 | 24.37 |
| CDY41557 | Canola | nucleus | 35.48 | 24.37 |
| CDY48016 | Canola | nucleus | 36.41 | 24.23 |
| CDY00446 | Canola | nucleus | 35.48 | 22.65 |
| CDY67263 | Canola | nucleus | 33.18 | 21.95 |
| CDY24657 | Canola | nucleus | 21.66 | 13.82 |
| CDY05301 | Canola | nucleus | 21.66 | 13.39 |
| CDX75170 | Canola | extracellular | 9.68 | 12.88 |
| CDY55846 | Canola | nucleus | 23.5 | 12.72 |
| CDY25867 | Canola | nucleus | 23.5 | 12.59 |
| CDY26001 | Canola | nucleus | 22.58 | 12.04 |
| CDY13339 | Canola | mitochondrion | 9.22 | 11.9 |
| CDY24201 | Canola | nucleus | 19.82 | 11.88 |
| CDY24106 | Canola | nucleus | 22.58 | 11.86 |
| CDY12068 | Canola | nucleus | 19.35 | 11.73 |
| CDX76950 | Canola | nucleus | 16.59 | 11.69 |
| CDX74070 | Canola | cytosol | 19.35 | 11.67 |
| CDY43360 | Canola | nucleus | 19.35 | 11.6 |
| CDY50131 | Canola | nucleus | 20.28 | 11.52 |
| CDY08023 | Canola | nucleus | 18.89 | 11.39 |
| CDY26229 | Canola | nucleus | 19.35 | 11.32 |
| CDY48318 | Canola | nucleus | 19.35 | 11.29 |
| CDY13782 | Canola | nucleus | 15.67 | 11.07 |
| CDY67299 | Canola | nucleus | 19.35 | 11.02 |
| CDX90262 | Canola | nucleus | 19.35 | 10.99 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.51 | 10.98 |
| CDY23739 | Canola | nucleus | 19.35 | 10.97 |
| CDY06947 | Canola | nucleus | 21.66 | 10.93 |
| CDY17173 | Canola | nucleus | 18.89 | 10.88 |
| CDY37724 | Canola | nucleus | 16.13 | 10.84 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.97 | 10.74 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 17.97 | 10.71 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.28 | 10.71 |
| CDY57580 | Canola | nucleus | 21.66 | 10.61 |
| CDY36753 | Canola | nucleus | 21.2 | 10.57 |
| CDY46690 | Canola | nucleus | 20.74 | 10.51 |
| CDX76015 | Canola | nucleus | 14.75 | 10.49 |
| CDY27186 | Canola | nucleus | 21.66 | 10.47 |
| CDX77783 | Canola | nucleus | 20.28 | 10.35 |
| CDX72106 | Canola | nucleus | 21.66 | 10.33 |
| CDY41059 | Canola | nucleus | 20.28 | 10.3 |
| CDX84689 | Canola | nucleus | 19.35 | 10.29 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 17.05 | 10.19 |
| CDY07975 | Canola | nucleus | 22.12 | 10.19 |
| CDY11989 | Canola | nucleus | 20.28 | 10.19 |
| CDX69279 | Canola | nucleus | 11.06 | 10.17 |
| CDX74030 | Canola | nucleus | 22.12 | 10.17 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 19.35 | 10.12 |
| CDX79527 | Canola | nucleus | 18.89 | 10.1 |
| CDY22136 | Canola | nucleus | 22.12 | 9.88 |
| CDX92807 | Canola | nucleus | 20.28 | 9.78 |
| CDY15850 | Canola | nucleus | 16.59 | 9.73 |
| CDY46689 | Canola | nucleus | 20.74 | 9.72 |
| CDY35966 | Canola | nucleus | 22.12 | 9.72 |
| CDY21399 | Canola | mitochondrion | 6.45 | 9.66 |
| CDY66272 | Canola | nucleus | 21.2 | 9.41 |
| CDX94301 | Canola | nucleus | 18.89 | 9.28 |
| CDY42724 | Canola | cytosol | 16.13 | 9.23 |
| CDY69852 | Canola | cytosol | 16.13 | 9.16 |
| CDY28918 | Canola | mitochondrion | 19.82 | 8.88 |
| CDX89316 | Canola | endoplasmic reticulum | 17.97 | 8.72 |
| CDY36357 | Canola | nucleus | 21.66 | 8.67 |
| CDY42577 | Canola | nucleus | 21.66 | 8.62 |
| CDY47382 | Canola | golgi, plastid | 15.21 | 7.93 |
| CDY25957 | Canola | nucleus | 19.35 | 7.59 |
| CDY40554 | Canola | nucleus | 19.82 | 6.55 |
| CDX69277 | Canola | mitochondrion | 0.92 | 1.08 |
Protein Annotations
| EnsemblPlants:CDY02889 | EnsemblPlantsGene:GSBRNA2T00115115001 | Gene3D:3.30.70.330 | GO:A0A078EQE9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY02889 | ProteinID:CDY02889.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF42F3 | MapMan:35.1 | : | : |
Description
BnaC04g25970D
Coordinates
chrLK031938:+:76746..79416
Molecular Weight (calculated)
24399.6 Da
IEP (calculated)
9.182
GRAVY (calculated)
-0.729
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSDNVNGC FGDTKLTKVF VGGLAWDTQK EAMHDHFIKY GDILEAVIIF DKLTRRSKGY GFVTFKDAEA AKRACEDSTP IINGRRSNCN LASLGGRHRR
101: SPTAMASPQE GSKNVSRATS GHVGNNQAQW YYPAGFTHQQ HQLQRQHHHH QAVPFYGYAS SYVPPNMTFN QKVGYVGGTY MNGYYAQPQP QPLPQLQYYH
201: QHHMYGGGRV QLEEEIA
101: SPTAMASPQE GSKNVSRATS GHVGNNQAQW YYPAGFTHQQ HQLQRQHHHH QAVPFYGYAS SYVPPNMTFN QKVGYVGGTY MNGYYAQPQP QPLPQLQYYH
201: QHHMYGGGRV QLEEEIA
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.