Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21399 | Canola | mitochondrion | 59.49 | 97.24 |
| CDY69197 | Canola | nucleus | 91.98 | 96.89 |
| CDY25759 | Canola | nucleus | 88.19 | 83.94 |
| KRH75298 | Soybean | cytosol, nucleus | 30.8 | 73.74 |
| KRH13261 | Soybean | cytosol | 35.02 | 66.94 |
| CDY67263 | Canola | nucleus | 87.76 | 63.41 |
| AT1G22910.3 | Thale cress | nucleus | 83.97 | 57.35 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 52.74 | 47.89 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 54.01 | 47.58 |
| PGSC0003DMT400008944 | Potato | nucleus | 52.74 | 47.35 |
| KRH23771 | Soybean | nucleus | 53.16 | 46.32 |
| KRH40033 | Soybean | nucleus | 53.16 | 46.32 |
| EES01849 | Sorghum | nucleus | 48.95 | 44.27 |
| CDY51790 | Canola | cytosol | 19.83 | 43.93 |
| CDX73279 | Canola | cytosol | 43.88 | 42.98 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 20.25 | 42.86 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 48.1 | 42.22 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 45.99 | 42.08 |
| GSMUA_Achr10P... | Banana | nucleus | 48.1 | 42.07 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 46.41 | 41.98 |
| KRH62942 | Soybean | mitochondrion | 35.02 | 40.69 |
| Zm00001d042641_P001 | Maize | nucleus | 48.95 | 39.32 |
| Os01t0876800-00 | Rice | nucleus | 48.95 | 38.67 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 48.1 | 38.51 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 48.1 | 38.51 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 48.1 | 38.38 |
| CDY31859 | Canola | nucleus | 38.82 | 38.17 |
| CDY31508 | Canola | nucleus | 40.08 | 38.0 |
| CDY33653 | Canola | nucleus | 40.08 | 37.55 |
| CDY01349 | Canola | nucleus | 37.13 | 36.51 |
| CDY29496 | Canola | nucleus | 40.08 | 36.4 |
| CDX96615 | Canola | nucleus | 38.4 | 36.11 |
| CDX88283 | Canola | nucleus | 40.51 | 34.29 |
| CDY02889 | Canola | nucleus | 31.22 | 34.1 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 44.73 | 33.97 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 44.3 | 33.65 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 44.3 | 33.55 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 44.73 | 33.54 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 48.1 | 33.53 |
| CDY41556 | Canola | nucleus | 40.93 | 33.45 |
| CDX73451 | Canola | cytosol | 34.18 | 32.4 |
| Os01t0958500-01 | Rice | nucleus | 41.77 | 31.94 |
| CDX78261 | Canola | nucleus | 34.18 | 31.27 |
| CDY64698 | Canola | nucleus | 34.18 | 31.03 |
| CDX87594 | Canola | nucleus | 41.77 | 30.94 |
| CDX80046 | Canola | nucleus | 40.93 | 30.7 |
| CDY41557 | Canola | nucleus | 40.08 | 30.06 |
| CDY48016 | Canola | nucleus | 40.93 | 29.75 |
| CDY27523 | Canola | nucleus | 40.51 | 29.72 |
| EES02078 | Sorghum | nucleus | 42.19 | 29.59 |
| CDX87460 | Canola | nucleus | 35.44 | 29.47 |
| CDX88432 | Canola | nucleus | 34.6 | 28.87 |
| Zm00001d042042_P001 | Maize | nucleus | 40.93 | 28.53 |
| CDX79253 | Canola | nucleus | 33.33 | 28.21 |
| CDY46642 | Canola | nucleus | 34.18 | 28.03 |
| CDY21356 | Canola | nucleus | 33.76 | 27.59 |
| CDX68024 | Canola | nucleus | 32.91 | 27.56 |
| CDY13339 | Canola | mitochondrion | 17.3 | 24.4 |
| CDY00446 | Canola | nucleus | 34.6 | 24.12 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 44.73 | 15.89 |
| CDY05301 | Canola | nucleus | 21.94 | 14.81 |
| CDY24657 | Canola | nucleus | 21.1 | 14.71 |
| CDY13782 | Canola | nucleus | 18.99 | 14.66 |
| CDX76950 | Canola | nucleus | 18.99 | 14.61 |
| CDY37724 | Canola | nucleus | 19.41 | 14.24 |
| CDX74070 | Canola | cytosol | 21.1 | 13.89 |
| CDY08023 | Canola | nucleus | 21.1 | 13.89 |
| CDY12068 | Canola | nucleus | 20.68 | 13.69 |
| CDY26229 | Canola | nucleus | 20.68 | 13.21 |
| CDY48318 | Canola | nucleus | 20.68 | 13.17 |
| CDY67299 | Canola | nucleus | 21.1 | 13.12 |
| CDX90262 | Canola | nucleus | 21.1 | 13.09 |
| CDY17173 | Canola | nucleus | 20.68 | 13.0 |
| CDY41059 | Canola | nucleus | 23.21 | 12.88 |
| CDY23739 | Canola | nucleus | 20.68 | 12.79 |
| CDY25867 | Canola | nucleus | 21.52 | 12.59 |
| CDY50131 | Canola | nucleus | 20.25 | 12.57 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 21.94 | 12.53 |
| CDX77783 | Canola | nucleus | 22.36 | 12.47 |
| CDX79527 | Canola | nucleus | 21.1 | 12.32 |
| CDY26001 | Canola | nucleus | 21.1 | 12.29 |
| CDY55846 | Canola | nucleus | 20.68 | 12.22 |
| CDY24201 | Canola | nucleus | 18.57 | 12.15 |
| CDY43360 | Canola | nucleus | 18.57 | 12.15 |
| CDY24106 | Canola | nucleus | 21.1 | 12.11 |
| CDX84689 | Canola | nucleus | 20.68 | 12.01 |
| CDY42724 | Canola | cytosol | 18.99 | 11.87 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.3 | 11.85 |
| CDY69852 | Canola | cytosol | 18.99 | 11.78 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.25 | 11.68 |
| CDY06947 | Canola | nucleus | 21.1 | 11.63 |
| CDY57580 | Canola | nucleus | 21.1 | 11.29 |
| CDY46690 | Canola | nucleus | 20.25 | 11.21 |
| CDY07975 | Canola | nucleus | 21.94 | 11.04 |
| CDY36753 | Canola | nucleus | 20.25 | 11.03 |
| CDY27186 | Canola | nucleus | 20.68 | 10.91 |
| CDX74030 | Canola | nucleus | 21.52 | 10.81 |
| CDX72106 | Canola | nucleus | 20.68 | 10.77 |
| CDY28918 | Canola | mitochondrion | 21.94 | 10.74 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.46 | 10.74 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.46 | 10.71 |
| CDY11989 | Canola | nucleus | 19.41 | 10.65 |
| CDY15850 | Canola | nucleus | 16.46 | 10.54 |
| CDY22136 | Canola | nucleus | 21.52 | 10.49 |
| CDX76015 | Canola | nucleus | 13.5 | 10.49 |
| CDX75170 | Canola | extracellular | 7.17 | 10.43 |
| CDX94301 | Canola | nucleus | 19.41 | 10.41 |
| CDY46689 | Canola | nucleus | 20.25 | 10.37 |
| CDX69279 | Canola | nucleus | 10.13 | 10.17 |
| CDY35966 | Canola | nucleus | 21.1 | 10.12 |
| CDY66272 | Canola | nucleus | 20.68 | 10.02 |
| CDX89316 | Canola | endoplasmic reticulum | 18.57 | 9.84 |
| CDX92807 | Canola | nucleus | 18.57 | 9.78 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 14.77 | 9.64 |
| CDY25957 | Canola | nucleus | 22.36 | 9.58 |
| CDY36357 | Canola | nucleus | 21.1 | 9.23 |
| CDY42577 | Canola | nucleus | 20.68 | 8.99 |
| CDY47382 | Canola | golgi, plastid | 13.92 | 7.93 |
| CDY40554 | Canola | nucleus | 21.94 | 7.93 |
| CDX69277 | Canola | mitochondrion | 5.06 | 6.45 |
Protein Annotations
| EnsemblPlants:CDY04769 | EnsemblPlantsGene:GSBRNA2T00119453001 | Gene3D:3.30.70.330 | GO:A0A078EVZ2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY04769 | ProteinID:CDY04769.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE9D58 | MapMan:35.1 | : |
Description
BnaC05g18200D
Coordinates
chrLK031957:-:586076..588413
Molecular Weight (calculated)
25445.9 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.316
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTTYTKVF VGGLAWETDK DTMKKHFEQF GEILEAVVIT DKASGRSKGY GFVTFKEAEA ARRACVDGTP VIDGRRANCN LASLGLQRSK PSTPNHGGRI
101: NNMRVMMSGT MQTGFGPPPT FTHYSHLPLN LFGYSYSSDF SPFPTNLYGV YGCNSAGQYG LYGNGNGVSG GLTAAAASAA PFYPCGGGQG GVQFSQPQPF
201: YHHFSAYDNP HHYSPATISL QQGVTGFPLQ PPLIPYL
101: NNMRVMMSGT MQTGFGPPPT FTHYSHLPLN LFGYSYSSDF SPFPTNLYGV YGCNSAGQYG LYGNGNGVSG GLTAAAASAA PFYPCGGGQG GVQFSQPQPF
201: YHHFSAYDNP HHYSPATISL QQGVTGFPLQ PPLIPYL
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.