Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017475.1-P | Field mustard | nucleus | 98.83 | 98.83 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 83.37 | 85.78 |
| CDX77783 | Canola | nucleus | 84.31 | 84.71 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 85.48 | 80.57 |
| CDY28918 | Canola | mitochondrion | 87.59 | 77.27 |
| CDY25957 | Canola | nucleus | 94.85 | 73.24 |
| CDY50131 | Canola | nucleus | 57.85 | 64.66 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 57.85 | 60.1 |
| CDY40554 | Canola | nucleus | 87.35 | 56.86 |
| GSMUA_Achr10P... | Banana | nucleus | 46.84 | 45.45 |
| GSMUA_Achr10P... | Banana | nucleus | 48.95 | 45.43 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 48.24 | 44.49 |
| TraesCSU01G068500.1 | Wheat | nucleus | 48.24 | 44.49 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 48.01 | 44.28 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 48.01 | 44.28 |
| CDX74030 | Canola | nucleus | 48.48 | 43.86 |
| CDY07975 | Canola | nucleus | 48.24 | 43.74 |
| Os11t0637700-01 | Rice | plasma membrane | 47.54 | 43.47 |
| Os07t0584500-01 | Rice | nucleus | 48.01 | 43.43 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 50.82 | 43.4 |
| CDY11989 | Canola | nucleus | 43.56 | 43.06 |
| CDY22136 | Canola | nucleus | 48.95 | 43.0 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 44.5 | 42.99 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 47.07 | 42.68 |
| CDX92807 | Canola | nucleus | 44.96 | 42.67 |
| CDX94301 | Canola | nucleus | 44.03 | 42.53 |
| CDY36753 | Canola | nucleus | 43.33 | 42.53 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.6 | 42.34 |
| CDY66272 | Canola | nucleus | 48.48 | 42.33 |
| Zm00001d007772_P001 | Maize | nucleus | 44.5 | 42.32 |
| Zm00001d019079_P001 | Maize | cytosol | 44.26 | 42.19 |
| CDX89316 | Canola | endoplasmic reticulum | 44.03 | 42.06 |
| CDY46690 | Canola | nucleus | 41.92 | 41.82 |
| EER96020 | Sorghum | nucleus | 44.5 | 41.76 |
| CDY35966 | Canola | nucleus | 48.24 | 41.7 |
| EER98147 | Sorghum | nucleus | 44.03 | 41.5 |
| EER97452 | Sorghum | nucleus | 45.43 | 41.19 |
| CDY46689 | Canola | nucleus | 44.5 | 41.04 |
| CDX75170 | Canola | extracellular | 15.22 | 39.88 |
| Zm00001d006704_P002 | Maize | nucleus | 44.96 | 39.67 |
| Zm00001d019084_P002 | Maize | nucleus | 42.15 | 39.65 |
| CDY12068 | Canola | nucleus | 32.55 | 38.83 |
| CDY23739 | Canola | nucleus | 34.19 | 38.12 |
| CDY17173 | Canola | nucleus | 33.49 | 37.93 |
| CDY67299 | Canola | nucleus | 33.72 | 37.8 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.37 | 37.29 |
| CDX90262 | Canola | nucleus | 33.02 | 36.91 |
| CDX84689 | Canola | nucleus | 34.89 | 36.52 |
| CDX79527 | Canola | nucleus | 34.66 | 36.45 |
| OQU83904 | Sorghum | nucleus | 37.7 | 35.78 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 45.2 | 35.67 |
| Zm00001d019086_P001 | Maize | nucleus | 43.79 | 35.15 |
| CDY37724 | Canola | nucleus | 26.23 | 34.67 |
| CDY26229 | Canola | nucleus | 26.7 | 30.73 |
| CDY48318 | Canola | nucleus | 26.7 | 30.65 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 48.48 | 30.49 |
| CDY24201 | Canola | nucleus | 25.76 | 30.39 |
| CDY43360 | Canola | nucleus | 25.76 | 30.39 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 25.06 | 29.48 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 25.06 | 29.4 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 23.18 | 28.61 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 24.12 | 28.37 |
| CDY51790 | Canola | cytosol | 6.79 | 27.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.03 | 26.79 |
| CDY42724 | Canola | cytosol | 21.78 | 24.54 |
| CDY69852 | Canola | cytosol | 21.78 | 24.35 |
| CDY36357 | Canola | nucleus | 29.51 | 23.25 |
| CDY04769 | Canola | nucleus | 12.88 | 23.21 |
| CDY42577 | Canola | nucleus | 29.51 | 23.12 |
| CDY69197 | Canola | nucleus | 11.94 | 22.67 |
| CDY31508 | Canola | nucleus | 12.88 | 22.0 |
| CDY25759 | Canola | nucleus | 12.65 | 21.69 |
| CDY33653 | Canola | nucleus | 12.65 | 21.34 |
| CDY01349 | Canola | nucleus | 11.94 | 21.16 |
| CDY31859 | Canola | nucleus | 11.94 | 21.16 |
| CDY29496 | Canola | nucleus | 12.65 | 20.69 |
| CDX73279 | Canola | cytosol | 11.71 | 20.66 |
| CDX96615 | Canola | nucleus | 12.18 | 20.63 |
| CDX69279 | Canola | nucleus | 11.24 | 20.34 |
| CDY02889 | Canola | nucleus | 10.3 | 20.28 |
| CDX88283 | Canola | nucleus | 13.11 | 20.0 |
| CDX73451 | Canola | cytosol | 10.54 | 18.0 |
| CDY41556 | Canola | nucleus | 11.94 | 17.59 |
| CDX87594 | Canola | nucleus | 13.11 | 17.5 |
| CDX68024 | Canola | nucleus | 11.48 | 17.31 |
| CDX88432 | Canola | nucleus | 11.48 | 17.25 |
| CDX87460 | Canola | nucleus | 11.48 | 17.19 |
| CDX79253 | Canola | nucleus | 11.24 | 17.14 |
| CDX78261 | Canola | nucleus | 10.3 | 16.99 |
| CDY21356 | Canola | nucleus | 11.24 | 16.55 |
| CDY21399 | Canola | mitochondrion | 5.62 | 16.55 |
| CDY67263 | Canola | nucleus | 12.65 | 16.46 |
| CDY26001 | Canola | nucleus | 15.69 | 16.46 |
| CDX80046 | Canola | nucleus | 12.18 | 16.46 |
| CDY27523 | Canola | nucleus | 12.41 | 16.41 |
| CDY48016 | Canola | nucleus | 12.41 | 16.26 |
| CDY24106 | Canola | nucleus | 15.69 | 16.22 |
| CDY41557 | Canola | nucleus | 11.94 | 16.14 |
| CDY64698 | Canola | nucleus | 9.84 | 16.09 |
| CDY25867 | Canola | nucleus | 15.22 | 16.05 |
| CDY55846 | Canola | nucleus | 14.99 | 15.96 |
| CDY46642 | Canola | nucleus | 10.77 | 15.92 |
| CDY08023 | Canola | nucleus | 13.11 | 15.56 |
| CDX74070 | Canola | cytosol | 12.65 | 15.0 |
| CDY27186 | Canola | nucleus | 15.22 | 14.48 |
| CDX72106 | Canola | nucleus | 15.22 | 14.29 |
| CDY00446 | Canola | nucleus | 11.24 | 14.12 |
| CDY13782 | Canola | nucleus | 10.07 | 14.01 |
| CDX69277 | Canola | mitochondrion | 6.09 | 13.98 |
| CDX76015 | Canola | nucleus | 9.84 | 13.77 |
| CDX76950 | Canola | nucleus | 9.84 | 13.64 |
| CDY57580 | Canola | nucleus | 14.05 | 13.54 |
| CDY06947 | Canola | nucleus | 13.35 | 13.26 |
| CDY24657 | Canola | nucleus | 10.54 | 13.24 |
| CDY05301 | Canola | nucleus | 10.77 | 13.11 |
| CDY13339 | Canola | mitochondrion | 5.15 | 13.1 |
| CDY47382 | Canola | golgi, plastid | 11.01 | 11.3 |
| CDY15850 | Canola | nucleus | 9.6 | 11.08 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HUP5 | UniProt:A0A078HUP5 | EnsemblPlants:CDY41059 | ProteinID:CDY41059 |
| ProteinID:CDY41059.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00072376001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE85FF | SEG:seg | : | : | : | : |
Description
BnaA09g18380DBnaA09g18380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUP5]
Coordinates
chrLK032489:-:115301..117414
Molecular Weight (calculated)
45497.4 Da
IEP (calculated)
7.735
GRAVY (calculated)
-0.318
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMESSCKLF IGGISWETSE DRLREYFQSF GEVLEAVIMK DRATGRARGF GFLVFADPNV AERVVLIRHV IDGKIVEAKK AVPRDDHVVL NRSNSSLQGS
101: PGPATSKKIF VGGLASSVTE AEFKMYFAQF GTITDVVVMY DHRTQRPRGF GFVSFESEEA VDRVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNPMNVNS
201: FGSSRISALL MNEYTQGFSQ SPISGYGVQP EVRYSPGVGG NRGGFSPFGH GFGIELNFEP GQTQNYGSGP NAGFGRPFSP GYAASQGRYG SQIESGGGAS
301: VRNNLWGNGG GLGGYMSNSP ISRSSFNGNS GMSSLGSIGD NWGGAARARS GYRSEGGGLG LDAMRGVHVG GYSSGSSSLE TDSLYSDSAW LSLPAKAEER
401: LGMGAFDFMS KGPAGYINTQ PNGGIAA
101: PGPATSKKIF VGGLASSVTE AEFKMYFAQF GTITDVVVMY DHRTQRPRGF GFVSFESEEA VDRVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNPMNVNS
201: FGSSRISALL MNEYTQGFSQ SPISGYGVQP EVRYSPGVGG NRGGFSPFGH GFGIELNFEP GQTQNYGSGP NAGFGRPFSP GYAASQGRYG SQIESGGGAS
301: VRNNLWGNGG GLGGYMSNSP ISRSSFNGNS GMSSLGSIGD NWGGAARARS GYRSEGGGLG LDAMRGVHVG GYSSGSSSLE TDSLYSDSAW LSLPAKAEER
401: LGMGAFDFMS KGPAGYINTQ PNGGIAA
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.