Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G150600.1 | Wheat | nucleus | 91.65 | 92.44 |
| TraesCSU01G068500.1 | Wheat | nucleus | 91.22 | 92.01 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 91.22 | 92.01 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 91.22 | 92.01 |
| GSMUA_Achr10P... | Banana | nucleus | 60.6 | 64.32 |
| OQU83904 | Sorghum | nucleus | 61.67 | 64.0 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 64.67 | 63.18 |
| GSMUA_Achr10P... | Banana | nucleus | 61.46 | 62.39 |
| KRH14098 | Soybean | nucleus | 63.81 | 62.21 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 63.6 | 62.13 |
| KRH74025 | Soybean | nucleus | 63.17 | 62.11 |
| Solyc04g014820.2.1 | Tomato | cytosol | 35.12 | 61.19 |
| KRH46297 | Soybean | nucleus | 61.88 | 60.33 |
| PGSC0003DMT400037271 | Potato | nucleus | 60.17 | 59.79 |
| Solyc07g048030.2.1 | Tomato | nucleus | 55.89 | 59.73 |
| KRG98573 | Soybean | nucleus | 61.24 | 59.71 |
| Os07t0584500-01 | Rice | nucleus | 59.53 | 58.9 |
| PGSC0003DMT400076643 | Potato | nucleus | 59.31 | 58.44 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 55.25 | 58.37 |
| Solyc10g006050.2.1 | Tomato | nucleus | 53.53 | 57.74 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 61.67 | 57.6 |
| KRH73860 | Soybean | nucleus | 58.67 | 57.44 |
| KRH14284 | Soybean | nucleus | 58.24 | 56.9 |
| PGSC0003DMT400074192 | Potato | nucleus | 57.6 | 56.75 |
| Solyc12g014600.1.1 | Tomato | nucleus | 52.25 | 55.84 |
| CDY07975 | Canola | nucleus | 55.67 | 55.2 |
| Bra001267.1-P | Field mustard | nucleus | 55.67 | 55.2 |
| CDX74030 | Canola | nucleus | 55.67 | 55.08 |
| PGSC0003DMT400034757 | Potato | nucleus | 54.82 | 54.7 |
| Solyc12g006180.1.1 | Tomato | nucleus | 51.18 | 54.57 |
| AT3G07810.2 | Thale cress | nucleus | 57.39 | 54.14 |
| Solyc11g012470.1.1 | Tomato | nucleus | 49.46 | 53.97 |
| Bra040031.1-P | Field mustard | nucleus | 56.1 | 53.91 |
| CDY22136 | Canola | nucleus | 56.1 | 53.91 |
| CDY66272 | Canola | nucleus | 56.32 | 53.78 |
| CDY35966 | Canola | nucleus | 56.1 | 53.04 |
| PGSC0003DMT400060554 | Potato | nucleus | 52.89 | 52.55 |
| Bra029681.1-P | Field mustard | nucleus | 56.32 | 52.49 |
| AT4G26650.1 | Thale cress | nucleus | 49.68 | 50.99 |
| CDX94301 | Canola | nucleus | 47.11 | 49.77 |
| Bra028973.1-P | Field mustard | nucleus | 45.82 | 49.42 |
| CDX92807 | Canola | nucleus | 47.32 | 49.11 |
| CDY11989 | Canola | nucleus | 45.4 | 49.07 |
| CDY50131 | Canola | nucleus | 40.04 | 48.95 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 43.47 | 48.92 |
| Bra024928.1-P | Field mustard | nucleus | 43.68 | 48.57 |
| CDY36753 | Canola | nucleus | 45.18 | 48.51 |
| Bra019094.1-P | Field mustard | nucleus | 47.97 | 48.38 |
| CDY46689 | Canola | nucleus | 47.97 | 48.38 |
| CDY46690 | Canola | nucleus | 44.33 | 48.36 |
| Bra021062.1-P | Field mustard | nucleus | 40.47 | 48.21 |
| CDX77783 | Canola | nucleus | 43.47 | 47.76 |
| Bra026413.1-P | Field mustard | nucleus | 43.25 | 47.75 |
| CDX89316 | Canola | endoplasmic reticulum | 45.61 | 47.65 |
| Bra017475.1-P | Field mustard | nucleus | 43.47 | 47.54 |
| CDY41059 | Canola | nucleus | 43.47 | 47.54 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 44.75 | 46.14 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 40.47 | 45.99 |
| Bra022145.1-P | Field mustard | nucleus | 45.18 | 45.87 |
| AT5G55550.10 | Thale cress | nucleus | 47.75 | 43.98 |
| CDY28918 | Canola | mitochondrion | 44.97 | 43.39 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 62.1 | 42.71 |
| CDX75170 | Canola | extracellular | 13.7 | 39.26 |
| Os08t0320100-01 | Rice | nucleus | 28.69 | 38.29 |
| CDY25957 | Canola | nucleus | 44.33 | 37.43 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 22.27 | 35.62 |
| CDY40554 | Canola | nucleus | 44.97 | 32.01 |
| Os02t0221500-01 | Rice | nucleus | 26.55 | 31.23 |
| Os05t0376000-00 | Rice | cytosol | 13.28 | 29.67 |
| Os01t0945800-01 | Rice | nucleus | 22.7 | 29.2 |
| Os07t0124600-01 | Rice | nucleus | 22.91 | 28.38 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 12.85 | 21.82 |
| Os08t0492100-02 | Rice | nucleus | 20.34 | 21.79 |
| Os02t0755400-01 | Rice | plastid | 8.14 | 21.59 |
| Os01t0876800-00 | Rice | nucleus | 13.06 | 20.33 |
| Os01t0958500-01 | Rice | nucleus | 12.85 | 19.35 |
| Os01t0614500-01 | Rice | nucleus | 18.42 | 19.24 |
| Os02t0714000-01 | Rice | nucleus, plastid | 11.78 | 19.16 |
| Os01t0265800-01 | Rice | nucleus | 18.63 | 17.76 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 11.13 | 16.77 |
| Os06t0220600-01 | Rice | plastid | 10.71 | 14.58 |
| Os04t0636900-02 | Rice | nucleus | 16.06 | 14.56 |
| Os02t0602600-00 | Rice | nucleus | 11.56 | 13.99 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4350986 | ProteinID:ABA94921.2 | EMBL:AK070544 | EMBL:AK105751 |
| ProteinID:BAF28698.1 | ProteinID:BAT14982.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os11g0637700 | EnsemblPlants:Os11t0637700-01 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | UniProt:Q2R0P4 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000D89B76 | RefSeq:XP_015617029.1 | SEG:seg |
Description
RNA binding protein ANucleotide-binding, alpha-beta plait domain containing protein. (Os11t0637700-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0637700-02);Similar to predicted protein. (Os11t0637700-03)
Coordinates
chr11:+:25193013..25197268
Molecular Weight (calculated)
49051.4 Da
IEP (calculated)
8.833
GRAVY (calculated)
-0.512
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADAGKLFI GGISWDTNED RLREYFDKYG EVVEAVIMRD RATGRARGFG FIVFADPAVA ERVIMEKHMI DGRMVEAKKA VPRDDQHALS KSGGSAHGSP
101: GPSRTKKIFV GGLASTVTEA DFRKYFEQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALFKTFHE LNGKMVEVKR AVPKELSPGP SMRSPVGGFN
201: YAVNRANNFL NGYTQGYNPS PVGGYGMRMD ARFGLLSGGR SSYPSFGGGY GVGMNFDPGM NPAIGGSSSF NNSLQYGRQL NPYYSGNSGR YNSNVSYGGV
301: NDSTGSVFNS LARNLWGNSG LSYSSNSASS NSFMSSANGG LGGIGNNNVN WGNPPVPAQG ANAGPGYGSG NFGYGSSETN FGLGTNAYGR NAGSGVVNTF
401: NQSTNGYGRN FGDSSGGGGG GGGGSIYGDT TWRSGSSELD GTSPFGYGLG NAASDVTAKN SAGYMGH
101: GPSRTKKIFV GGLASTVTEA DFRKYFEQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALFKTFHE LNGKMVEVKR AVPKELSPGP SMRSPVGGFN
201: YAVNRANNFL NGYTQGYNPS PVGGYGMRMD ARFGLLSGGR SSYPSFGGGY GVGMNFDPGM NPAIGGSSSF NNSLQYGRQL NPYYSGNSGR YNSNVSYGGV
301: NDSTGSVFNS LARNLWGNSG LSYSSNSASS NSFMSSANGG LGGIGNNNVN WGNPPVPAQG ANAGPGYGSG NFGYGSSETN FGLGTNAYGR NAGSGVVNTF
401: NQSTNGYGRN FGDSSGGGGG GGGGSIYGDT TWRSGSSELD GTSPFGYGLG NAASDVTAKN SAGYMGH
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.