Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14284 | Soybean | nucleus | 95.6 | 95.4 |
| KRH46297 | Soybean | nucleus | 83.86 | 83.51 |
| KRG98573 | Soybean | nucleus | 82.81 | 82.46 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 72.75 | 72.59 |
| PGSC0003DMT400037271 | Potato | nucleus | 66.04 | 67.02 |
| PGSC0003DMT400076643 | Potato | nucleus | 66.04 | 66.46 |
| Solyc10g006050.2.1 | Tomato | nucleus | 59.75 | 65.82 |
| Solyc12g014600.1.1 | Tomato | nucleus | 59.96 | 65.45 |
| KRH74025 | Soybean | nucleus | 64.15 | 64.42 |
| KRH14098 | Soybean | nucleus | 63.94 | 63.67 |
| GSMUA_Achr10P... | Banana | nucleus | 58.49 | 63.41 |
| GSMUA_Achr10P... | Banana | nucleus | 57.65 | 59.78 |
| KRH07772 | Soybean | cytosol | 12.16 | 59.18 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 57.44 | 59.18 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 57.23 | 58.96 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 57.23 | 58.96 |
| TraesCSU01G068500.1 | Wheat | nucleus | 57.02 | 58.75 |
| Os11t0637700-01 | Rice | plasma membrane | 57.44 | 58.67 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 61.43 | 58.6 |
| AT4G26650.1 | Thale cress | nucleus | 54.93 | 57.58 |
| Bra028973.1-P | Field mustard | nucleus | 52.2 | 57.51 |
| CDY11989 | Canola | nucleus | 51.57 | 56.94 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 52.41 | 56.56 |
| Os07t0584500-01 | Rice | nucleus | 55.77 | 56.36 |
| CDX94301 | Canola | nucleus | 52.2 | 56.33 |
| CDX92807 | Canola | nucleus | 52.83 | 56.0 |
| CDY36753 | Canola | nucleus | 50.94 | 55.86 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 54.3 | 54.99 |
| CDX89316 | Canola | endoplasmic reticulum | 51.36 | 54.81 |
| EER98147 | Sorghum | nucleus | 51.99 | 54.75 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 53.88 | 54.68 |
| Zm00001d007772_P001 | Maize | nucleus | 51.36 | 54.57 |
| EER97452 | Sorghum | nucleus | 53.88 | 54.56 |
| EER96020 | Sorghum | nucleus | 51.99 | 54.51 |
| Zm00001d019079_P001 | Maize | cytosol | 51.15 | 54.46 |
| Bra026413.1-P | Field mustard | nucleus | 48.22 | 54.37 |
| Bra019094.1-P | Field mustard | nucleus | 52.41 | 54.0 |
| CDY46689 | Canola | nucleus | 52.41 | 54.0 |
| CDY46690 | Canola | nucleus | 47.8 | 53.27 |
| Zm00001d019084_P002 | Maize | nucleus | 50.31 | 52.86 |
| Zm00001d006704_P002 | Maize | nucleus | 52.41 | 51.65 |
| AT5G55550.10 | Thale cress | nucleus | 53.25 | 50.1 |
| TraesCS2A01G190400.1 | Wheat | plastid | 53.67 | 48.21 |
| Zm00001d019086_P001 | Maize | nucleus | 52.2 | 46.8 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 52.83 | 46.58 |
| OQU83904 | Sorghum | nucleus | 43.61 | 46.22 |
| KRH56541 | Soybean | nucleus | 17.4 | 41.5 |
| KRH34534 | Soybean | nucleus | 40.88 | 41.4 |
| KRG92276 | Soybean | endoplasmic reticulum | 40.88 | 40.97 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 57.86 | 40.65 |
| KRH17717 | Soybean | nucleus | 28.3 | 38.35 |
| KRH07154 | Soybean | nucleus | 29.35 | 37.63 |
| KRG94084 | Soybean | nucleus | 29.14 | 37.17 |
| KRH75298 | Soybean | cytosol, nucleus | 7.13 | 34.34 |
| KRH52137 | Soybean | nucleus | 27.04 | 34.13 |
| KRH61448 | Soybean | nucleus | 27.46 | 34.11 |
| KRH23293 | Soybean | nucleus | 25.16 | 33.99 |
| KRG93213 | Soybean | nucleus | 26.83 | 33.95 |
| KRH13261 | Soybean | cytosol | 8.39 | 32.26 |
| KRH28467 | Soybean | cytosol | 23.06 | 30.14 |
| KRH77004 | Soybean | nucleus | 22.85 | 30.11 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 18.45 | 27.16 |
| KRH23771 | Soybean | nucleus | 13.84 | 24.26 |
| KRH40033 | Soybean | nucleus | 13.63 | 23.9 |
| KRH51553 | Soybean | nucleus, plastid | 13.42 | 22.38 |
| KRH60871 | Soybean | nucleus, plastid | 13.42 | 22.38 |
| KRH64318 | Soybean | nucleus | 11.74 | 21.79 |
| KRH62942 | Soybean | mitochondrion | 9.22 | 21.57 |
| KRH53608 | Soybean | nucleus | 11.11 | 21.54 |
| KRH06306 | Soybean | nucleus | 11.53 | 20.45 |
| KRH06384 | Soybean | nucleus | 12.79 | 20.27 |
| KRH26210 | Soybean | nucleus | 18.45 | 20.14 |
| KRH16743 | Soybean | nucleus | 11.53 | 20.07 |
| KRH71299 | Soybean | nucleus | 16.14 | 20.05 |
| KRH47819 | Soybean | nucleus | 12.37 | 19.93 |
| KRH18921 | Soybean | nucleus | 11.53 | 19.93 |
| KRH47731 | Soybean | nucleus | 11.11 | 19.85 |
| KRG95365 | Soybean | nucleus | 13.84 | 19.64 |
| KRH55109 | Soybean | nucleus | 18.24 | 19.59 |
| KRH50169 | Soybean | nucleus | 15.72 | 19.53 |
| KRH67043 | Soybean | nucleus | 13.63 | 19.12 |
| KRH47808 | Soybean | nucleus | 10.9 | 18.18 |
| KRH06373 | Soybean | nucleus | 10.27 | 17.69 |
| KRH73477 | Soybean | nucleus | 18.24 | 17.54 |
| KRH62327 | Soybean | nucleus | 10.48 | 17.42 |
| KRH14673 | Soybean | nucleus | 17.82 | 17.21 |
| KRH53044 | Soybean | nucleus | 10.27 | 17.07 |
| KRG94993 | Soybean | nucleus | 16.14 | 16.08 |
| KRH66628 | Soybean | nucleus | 15.72 | 15.43 |
Protein Annotations
| EntrezGene:100814628 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02001288 | InterPro:DAZAP1_RRM2 | EnsemblPlantsGene:GLYMA_02G297000 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JJG3 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH73860 | ProteinID:KRH73860 | ProteinID:KRH73860.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002337477 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:47470380..47474437
Molecular Weight (calculated)
50298.1 Da
IEP (calculated)
7.722
GRAVY (calculated)
-0.470
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDLGKLFI GGISWDTDDE RLKEYFGKYG EVIEAVIMRD RTTGRARGFG FVVFADPSAA ERVIMDKHII DGRTVEAKKA VPRDDQQTIN RQTGSIHGSP
101: SPGRTKKIFV GGLPSTITES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DRVLYKTFHE LNGKMVEVKR AVPKELSPGP TRSPLIGYNY
201: GLNRTSSFLN SYAQGFNMNP IGGYGVRMDG RFSPLTSARS GFTPFGSSGY GMGVNLDLGL NPSYGGTSGY GGNLGYGRMS PFNDGNSNRY TTPIGNSGGN
301: GRSGSLMNSA SRSVWGNGGL NNAVNSPVSP GAYLGSGSGT FGVSIGNAGT NWGPSVPTQG GGAASGYSTW GSYEGGDNSI GLGGGGYGRN SSPSVPQSST
401: FTAPTGDYEG SYGDLYRNGS VYSDSTLRSA ASEIDASGSF GYGGLGGIAS DDLVKSSEGF IGNYNVISRQ TNRGIAA
101: SPGRTKKIFV GGLPSTITES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DRVLYKTFHE LNGKMVEVKR AVPKELSPGP TRSPLIGYNY
201: GLNRTSSFLN SYAQGFNMNP IGGYGVRMDG RFSPLTSARS GFTPFGSSGY GMGVNLDLGL NPSYGGTSGY GGNLGYGRMS PFNDGNSNRY TTPIGNSGGN
301: GRSGSLMNSA SRSVWGNGGL NNAVNSPVSP GAYLGSGSGT FGVSIGNAGT NWGPSVPTQG GGAASGYSTW GSYEGGDNSI GLGGGGYGRN SSPSVPQSST
401: FTAPTGDYEG SYGDLYRNGS VYSDSTLRSA ASEIDASGSF GYGGLGGIAS DDLVKSSEGF IGNYNVISRQ TNRGIAA
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.