CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94084	Soybean	nucleus	96.77	96.26
KRH56541	Soybean	nucleus	46.77	87.0
KRG93213	Soybean	nucleus	84.14	83.02
VIT_14s0066g00480.t01	Wine grape	nucleus	75.0	74.2
Solyc02g093340.2.1	Tomato	nucleus	66.4	63.5
PGSC0003DMT400032811	Potato	nucleus	66.13	63.24
AT5G40490.1	Thale cress	nucleus	66.67	58.63
KRH17717	Soybean	nucleus	54.3	57.39
Bra025568.1-P	Field mustard	nucleus	66.67	45.5
CDY36357	Canola	nucleus	66.13	45.39
CDY42577	Canola	nucleus	66.4	45.32
KRH23293	Soybean	nucleus	41.13	43.34
KRH07772	Soybean	cytosol	10.75	40.82
KRG98573	Soybean	nucleus	39.78	30.9
KRH46297	Soybean	nucleus	39.52	30.69
KRG92276	Soybean	endoplasmic reticulum	38.98	30.46
KRH34534	Soybean	nucleus	38.17	30.15
KRH74025	Soybean	nucleus	37.9	29.68
KRH73860	Soybean	nucleus	37.63	29.35
KRH14284	Soybean	nucleus	37.37	29.08
KRH14098	Soybean	nucleus	37.37	29.02
KRH13261	Soybean	cytosol	9.14	27.42
KRH61448	Soybean	nucleus	27.96	27.08
KRH52137	Soybean	nucleus	27.15	26.72
KRH28467	Soybean	cytosol	24.46	24.93
KRH77004	Soybean	nucleus	24.19	24.86
KRH75298	Soybean	cytosol, nucleus	6.18	23.23
KRH23771	Soybean	nucleus	15.86	21.69
KRH05541	Soybean	cytosol, endoplasmic reticulum	18.28	20.99
KRH40033	Soybean	nucleus	15.32	20.96
KRH51553	Soybean	nucleus, plastid	15.32	19.93
KRH60871	Soybean	nucleus, plastid	15.32	19.93
KRH18921	Soybean	nucleus	14.78	19.93
KRH47731	Soybean	nucleus	14.25	19.85
KRH16743	Soybean	nucleus	14.52	19.71
KRH50169	Soybean	nucleus	20.16	19.53
KRG95365	Soybean	nucleus	17.47	19.35
KRH06306	Soybean	nucleus	13.98	19.33
KRH71299	Soybean	nucleus	19.89	19.27
KRH67043	Soybean	nucleus	17.2	18.82
KRH26210	Soybean	nucleus	21.77	18.54
KRH64318	Soybean	nucleus	12.63	18.29
KRH55109	Soybean	nucleus	21.77	18.24
KRH62942	Soybean	mitochondrion	9.95	18.14
KRH62327	Soybean	nucleus	13.71	17.77
KRH53608	Soybean	nucleus	11.29	17.07
KRH53044	Soybean	nucleus	12.9	16.72
KRH06384	Soybean	nucleus	13.17	16.28
KRH47819	Soybean	nucleus	12.9	16.22
KRH14673	Soybean	nucleus	21.24	15.99
KRH06373	Soybean	nucleus	11.83	15.88
KRH73477	Soybean	nucleus	20.97	15.73
KRG94993	Soybean	nucleus	19.89	15.45
KRH47808	Soybean	nucleus	11.83	15.38
KRH66628	Soybean	nucleus	19.35	14.81

Protein Annotations

EntrezGene:100813165	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02009943	EnsemblPlantsGene:GLYMA_16G070900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MLU4	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH07154	ProteinID:KRH07154	ProteinID:KRH07154.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45276	PANTHER:PTHR45276:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233AD5B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:7079250..7083468

Molecular Weight (calculated)

38854.5 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.683

Length

372 amino acids

Sequence
(BLAST)

001: MDSPPSNHHA VDGDANDLVR PFSHRDDDGK PQPLTGDGAS PGKIFIGGLA RETTIAQFIK HFGKYGEITD SVIMKDRKTG QPRGFGFITY ADPSVVDTVI
101: EDTHIINGKQ VEIKRTIPRG AVGSNSKDFR TKKIFVGGIP STVTEDEFRD FFTRYGEVKD HQIMRDHSTN RSRGFGFITY DSEEAVDDLL SVGNKIEFAG
201: AQVEIKKAEP KKPNPPAPSS KRYNDSRSSY GGGYGDAYDG FGGNFGMGGY RSGGAYGGRG SAYGGFGSEF GGYGGYAGAM GPYRGDPSLG YAGRYGGGYG
301: RGYDLGGYGG PSEGYGAYGG GGGGGSSGSA YGSSSYDASL GGGYGAAAGG SFYGTRGGYG GAGTGRYHPY GR

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.