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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH14673 Soybean nucleus 91.73 92.11
VIT_06s0009g01180.t01 Wine grape mitochondrion, nucleus, plastid 60.48 57.92
PGSC0003DMT400058431 Potato nucleus 56.65 57.35
Solyc01g008970.2.1 Tomato nucleus 42.74 56.38
KRG94993 Soybean nucleus 48.39 50.1
KRH66628 Soybean nucleus 48.79 49.79
GSMUA_Achr6P15950_001 Banana nucleus 46.57 49.57
TraesCS3B01G211700.1 Wheat nucleus 41.73 45.7
Zm00001d040344_P001 Maize extracellular, plasma membrane 41.53 45.37
TraesCS3D01G186500.1 Wheat nucleus 43.35 44.79
TraesCS3A01G181900.1 Wheat nucleus 43.15 44.58
HORVU3Hr1G037280.1 Barley nucleus, plastid 43.55 44.26
GSMUA_Achr10P... Banana mitochondrion, nucleus 38.31 43.78
Os01t0265800-01 Rice nucleus 43.15 43.67
EES02736 Sorghum plastid 40.52 43.32
GSMUA_Achr10P... Banana nucleus 17.54 37.66
KRH71299 Soybean nucleus 27.22 35.16
KRH50169 Soybean nucleus 26.81 34.64
GSMUA_AchrUn_... Banana nucleus 29.64 34.27
HORVU6Hr1G054690.5 Barley plastid 12.7 33.51
HORVU2Hr1G116150.4 Barley nucleus 27.22 32.61
GSMUA_Achr4P09210_001 Banana nucleus 29.03 32.58
TraesCS2D01G529100.1 Wheat nucleus 32.46 31.63
TraesCS2B01G556700.1 Wheat nucleus 32.46 31.63
TraesCS2A01G526400.1 Wheat nucleus 32.46 31.63
KRH55109 Soybean nucleus 28.23 31.53
KRH26210 Soybean nucleus 27.62 31.35
KRH75298 Soybean cytosol, nucleus 6.25 31.31
Os04t0636900-02 Rice nucleus 31.85 30.68
Zm00001d002141_P006 Maize nucleus 31.65 30.13
EES12939 Sorghum nucleus 31.85 29.98
Zm00001d026397_P001 Maize nucleus, plasma membrane 31.45 29.94
KXG30578 Sorghum nucleus 22.18 29.57
KRH13261 Soybean cytosol 7.26 29.03
Os02t0602600-00 Rice nucleus 22.58 29.02
KRG95365 Soybean nucleus 19.35 28.57
KRH67043 Soybean nucleus 19.35 28.24
KRH07772 Soybean cytosol 4.84 24.49
EES10068 Sorghum nucleus 20.97 24.13
KRH56541 Soybean nucleus 9.48 23.5
HORVU2Hr1G116230.1 Barley nucleus 18.75 22.91
KRH51553 Soybean nucleus, plastid 12.3 21.33
KRH60871 Soybean nucleus, plastid 12.3 21.33
KRG94084 Soybean nucleus 15.93 21.12
KRH17717 Soybean nucleus 14.92 21.02
KRH07154 Soybean nucleus 15.73 20.97
KRH64318 Soybean nucleus 10.48 20.23
KRH16743 Soybean nucleus 11.09 20.07
KRH18921 Soybean nucleus 11.09 19.93
KRH23771 Soybean nucleus 10.89 19.85
KRH47731 Soybean nucleus 10.69 19.85
KRH28467 Soybean cytosol 14.52 19.73
KRG93213 Soybean nucleus 14.92 19.63
KRH62942 Soybean mitochondrion 8.06 19.61
KRH62327 Soybean nucleus 11.29 19.51
KRH53608 Soybean nucleus 9.68 19.51
KRH40033 Soybean nucleus 10.69 19.49
KRH77004 Soybean nucleus 14.11 19.34
KRH06306 Soybean nucleus 10.48 19.33
KRH23293 Soybean nucleus 13.71 19.26
KRH47819 Soybean nucleus 11.29 18.92
KRH06384 Soybean nucleus 11.29 18.6
KRH73860 Soybean nucleus 17.54 18.24
KRH53044 Soybean nucleus 10.48 18.12
KRH14284 Soybean nucleus 17.34 17.99
KRH46297 Soybean nucleus 17.14 17.75
KRG98573 Soybean nucleus 16.53 17.12
KRH74025 Soybean nucleus 16.13 16.84
KRH47808 Soybean nucleus 9.68 16.78
KRH61448 Soybean nucleus 12.9 16.67
KRH06373 Soybean nucleus 9.27 16.61
KRH14098 Soybean nucleus 15.93 16.49
KRH52137 Soybean nucleus 12.1 15.87
KRG92276 Soybean endoplasmic reticulum 14.31 14.92
KRH34534 Soybean nucleus 14.11 14.86
KRH05541 Soybean cytosol, endoplasmic reticulum 9.68 14.81
Protein Annotations
EntrezGene:100792637Gene3D:3.30.70.330MapMan:35.1EMBL:ACUP02001278ncoils:CoilEnsemblPlantsGene:GLYMA_02G275400
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488UniProt:I1JIR8InterPro:IPR000504
InterPro:IPR012677EnsemblPlants:KRH73477ProteinID:KRH73477ProteinID:KRH73477.1InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076
PFscan:PS50102PANTHER:PTHR44578PANTHER:PTHR44578:SF4InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360
SUPFAM:SSF54928UniParc:UPI0002337047SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:45832681..45837327
Molecular Weight (calculated)
54084.5 Da
IEP (calculated)
5.065
GRAVY (calculated)
-0.965
Length
496 amino acids
Sequence
(BLAST)
001: MPMAKKRKLR SSNPEPTKPV EPQQQNHETV ELDQQQPIPE PTLEDSNTMA IDEPKHEQEE EPQNAESEQE EEEEEEEEDE QQEEQEPETR EGQPGPETLE
101: AANQAEANGS NEGNNEEEEE EDLTLEEEPV EKLLEPFTKE QLHSLVTQAV DMFPEFVDSV RRIADVDPAH RKIFVHGLGW DATAETLTSV FGKYGEIEDC
201: KAVTDKVSGK SKGYAFILFK HRDDARKALK HPQKKIGNRT TSCQLASAGP VPAPPPSVTP VSEYTQRKIF VSNVSAEIDP QKLLEFFKQF GEVEDGPLGL
301: DKNTGKPKGF ALFVYKSVES AKKALEEPNK NYEGHTLYCQ KAVDGPKGSK GYHHQQHSHS HHHHHHHQPH YQRKEKNKYS SGGGGPSHGS GHLMAPSGSA
401: VGGFNPGVPA QGLNPVLGQA LTALINQGAG LGLGNLLGGL GGAPVNQGGP PAPYANQPAM GYGNQPAMQP GYQNPQMGQS SGVRPHPGAG APYMGH
Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.