Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 74.46 | 40.09 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 69.26 | 36.2 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 14.29 | 35.48 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 19.48 | 29.8 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 19.05 | 27.67 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 18.18 | 23.73 |
| Solyc01g008970.2.1 | Tomato | nucleus | 38.1 | 23.4 |
| Os04t0636900-02 | Rice | nucleus | 48.05 | 21.55 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 48.48 | 21.5 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 31.17 | 21.49 |
| Zm00001d002141_P006 | Maize | nucleus | 47.62 | 21.11 |
| EES12939 | Sorghum | nucleus | 47.62 | 20.87 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 45.02 | 20.43 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 45.02 | 20.43 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.21 | 20.33 |
| Bra014667.1-P | Field mustard | nucleus | 26.84 | 20.33 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 44.59 | 20.24 |
| CDX76015 | Canola | nucleus | 26.41 | 20.0 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 36.8 | 19.59 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 15.15 | 19.34 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 38.96 | 19.31 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 19.48 | 19.07 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 12.12 | 19.05 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 30.3 | 18.82 |
| AT2G41060.3 | Thale cress | nucleus | 36.36 | 18.63 |
| CDY06947 | Canola | nucleus | 34.63 | 18.6 |
| KRG94993 | Soybean | nucleus | 38.1 | 18.37 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 30.74 | 18.3 |
| CDY57580 | Canola | nucleus | 35.06 | 18.28 |
| Bra016954.1-P | Field mustard | nucleus | 34.63 | 18.18 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 36.36 | 18.14 |
| KRH14673 | Soybean | nucleus | 38.53 | 18.02 |
| KRH66628 | Soybean | nucleus | 37.23 | 17.7 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 22.08 | 17.59 |
| KRH73477 | Soybean | nucleus | 37.66 | 17.54 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 19.48 | 17.37 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 38.96 | 17.37 |
| CDY27186 | Canola | nucleus | 33.77 | 17.37 |
| Bra007277.1-P | Field mustard | nucleus | 33.77 | 17.37 |
| CDX72106 | Canola | nucleus | 34.2 | 17.36 |
| PGSC0003DMT400058431 | Potato | nucleus | 36.8 | 17.35 |
| GSMUA_Achr10P... | Banana | nucleus | 20.35 | 17.34 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 19.48 | 17.18 |
| AT3G56860.10 | Thale cress | nucleus | 35.5 | 17.15 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 19.91 | 17.04 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 19.05 | 16.67 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 29.44 | 16.43 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 19.05 | 15.77 |
| GSMUA_Achr11P... | Banana | nucleus | 17.75 | 15.47 |
| CDY47382 | Canola | golgi, plastid | 27.27 | 15.14 |
| GSMUA_Achr10P... | Banana | nucleus | 14.29 | 13.31 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 12.55 | 12.61 |
| GSMUA_Achr10P... | Banana | nucleus | 13.85 | 9.61 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 12.99 | 8.9 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 12.99 | 8.36 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 11.69 | 7.99 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 14.72 | 7.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.82 | 7.6 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 12.12 | 7.39 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 10.82 | 7.37 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 20.35 | 7.05 |
| GSMUA_Achr10P... | Banana | nucleus | 13.42 | 7.05 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 13.42 | 7.01 |
| GSMUA_Achr10P... | Banana | nucleus | 13.85 | 6.96 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 13.85 | 6.4 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 11.69 | 6.11 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 9.52 | 5.42 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 13.85 | 4.71 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 6.49 | 4.56 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 3.46 | 1.98 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P30510_001 | EnsemblPlants:GSMUA_Achr10T30510_001 | EnsemblPlantsGene:GSMUA_Achr10G30510_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44578 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000296EDCB | UniProt:M0RMS5 | MapMan:35.1 | : | : |
Description
RNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G30510_001]
Coordinates
chr10:+:32698496..32699471
Molecular Weight (calculated)
25370.4 Da
IEP (calculated)
8.504
GRAVY (calculated)
-0.370
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKKRKVDQ EDELLISAAP NHAGELLPQA PHQPVVYTPA PASDEEEGGE DDDDDDVGKL LEPLSRDQLV AILRTTAAAD PATLVEIRRV ADLDPAHRKL
101: FVHGLGWETT AEGLRAAFGS YGDIDDCRVI VDKGSGRSKG YGFVLFRHRV SARRALRRPQ KLIDNRMTSC QLASSGPSAP ILRAICSTAS GPLITRVRQR
201: PFRMLRHRQV SHPAQELSMG PVMLGLRLIW G
101: FVHGLGWETT AEGLRAAFGS YGDIDDCRVI VDKGSGRSKG YGFVLFRHRV SARRALRRPQ KLIDNRMTSC QLASSGPSAP ILRAICSTAS GPLITRVRQR
201: PFRMLRHRQV SHPAQELSMG PVMLGLRLIW G
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.