Factsheet for GSMUA_Achr8P24330_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09830_001	Banana	mitochondrion	31.72	60.93
PGSC0003DMT400025900	Potato	nucleus	57.24	57.84
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	45.17	54.36
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	28.97	52.83
GSMUA_Achr9P14920_001	Banana	plastid	31.03	50.85
AT5G53720.1	Thale cress	cytosol	17.24	50.0
CDY51790	Canola	cytosol	17.93	48.6
GSMUA_AchrUn_...	Banana	mitochondrion	39.31	47.3
CDY28822	Canola	cytosol, nucleus, plastid	17.93	46.43
GSMUA_Achr8P08440_001	Banana	nucleus	41.03	45.95
GSMUA_Achr3P21850_001	Banana	nucleus	40.69	45.04
GSMUA_Achr10P...	Banana	nucleus	40.34	43.17
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	40.0	42.96
GSMUA_Achr8P23460_001	Banana	nucleus	34.48	42.37
GSMUA_Achr5P05400_001	Banana	mitochondrion	36.55	40.15
KRH64318	Soybean	nucleus	34.83	39.3
KRH53608	Soybean	nucleus	33.1	39.02
GSMUA_Achr5P17700_001	Banana	cytosol	12.41	38.71
GSMUA_Achr11P...	Banana	nucleus	34.83	38.11
AT5G53680.1	Thale cress	cytosol	21.03	36.09
AT5G11412.1	Thale cress	endoplasmic reticulum	20.69	34.29
GSMUA_Achr3P13820_001	Banana	cytosol	31.38	32.62
GSMUA_Achr10P...	Banana	nucleus	17.59	22.08
GSMUA_Achr7P00730_001	Banana	cytosol	13.1	20.99
GSMUA_Achr4P32300_001	Banana	nucleus	10.34	20.41
Bra029612.1-P	Field mustard	nucleus	19.31	19.51
GSMUA_Achr10P...	Banana	nucleus	16.21	18.95
AT3G06970.1	Thale cress	nucleus	19.31	17.67
CDY05301	Canola	nucleus	21.38	17.66
CDY24657	Canola	nucleus	20.0	17.06
GSMUA_Achr9P12410_001	Banana	nucleus	19.66	17.01
CDX74070	Canola	cytosol	20.69	16.67
GSMUA_Achr7P13480_001	Banana	nucleus	19.31	16.62
GSMUA_Achr5P09550_001	Banana	nucleus	21.03	16.4
CDY08023	Canola	nucleus	20.34	16.39
GSMUA_Achr5P09540_001	Banana	nucleus	21.72	16.24
GSMUA_Achr10P...	Banana	nucleus	18.62	16.22
GSMUA_Achr6P24180_001	Banana	cytosol	36.9	16.04
Bra001228.1-P	Field mustard	cytosol	19.66	15.75
GSMUA_AchrUn_...	Banana	cytosol	17.59	15.5
GSMUA_Achr1P19260_001	Banana	nucleus	17.93	15.38
GSMUA_Achr1P09440_001	Banana	cytosol	17.59	15.04
GSMUA_Achr2P14710_001	Banana	cytosol	18.28	14.76
GSMUA_Achr8P25380_001	Banana	nucleus	18.97	14.51
GSMUA_Achr9P12880_001	Banana	cytosol	11.38	14.35
GSMUA_Achr1P10970_001	Banana	nucleus	21.03	13.99
GSMUA_Achr10P...	Banana	nucleus	20.69	13.64
GSMUA_AchrUn_...	Banana	nucleus	20.0	13.52
GSMUA_Achr6P15950_001	Banana	nucleus	20.69	12.88
GSMUA_Achr10P...	Banana	nucleus	20.0	12.61
GSMUA_Achr4P09210_001	Banana	nucleus	18.97	12.44
GSMUA_Achr4P33100_001	Banana	nucleus	18.97	12.44
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	17.93	11.98
GSMUA_Achr4P24260_001	Banana	cytosol	13.45	11.85
GSMUA_Achr6P10970_001	Banana	nucleus	19.31	11.2
GSMUA_Achr4P28100_001	Banana	nucleus	16.21	10.63
GSMUA_Achr3P02300_001	Banana	nucleus	20.69	8.84
GSMUA_Achr5P17690_001	Banana	nucleus	11.72	8.42

Protein Annotations

EnsemblPlants:GSMUA_Achr8P24330_001	EnsemblPlants:GSMUA_Achr8T24330_001	EnsemblPlantsGene:GSMUA_Achr8G24330_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294AD2E	UniProt:M0TT86	MapMan:35.1	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G24330_001]

Coordinates

chr8:+:28539867..28545070

Molecular Weight (calculated)

31198.6 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.337

Length

290 amino acids

Sequence
(BLAST)

001: MAFHHAGPGS ASGSASSSSS GFHFPNSLFG DTTYTKVFVG GLAWETKSET LRRHFEQFGE TLEAVVITDK NTGRSKGYGF VTFRDPESAR RACADPSPVI
101: DGRRANCNLA SLGRSRPFLP FGVRPRSGLY LGGMSVQRGP YVGSPAHQQP VPFSYQEGLP YAAYSYNLYG PEYVYPQSLL QNAYNPYTGQ PYVQVYGFPG
201: AINTSIYPFD QFGQPIPPGY TAMHGYTLPT QPIVQLGGPN VNGMASAPRP VIQSPYPAGL AAPIPAQPHV IVPAQSPQFM QGSSSDQTTV

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.