Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_13s0019g03610.t01 | Wine grape | nucleus | 45.66 | 48.99 |
Solyc04g049920.2.1 | Tomato | nucleus | 43.4 | 47.72 |
PGSC0003DMT400027411 | Potato | nucleus | 43.77 | 45.67 |
GSMUA_Achr4P09830_001 | Banana | mitochondrion | 25.28 | 44.37 |
Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 46.04 | 43.73 |
TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 48.68 | 43.14 |
EER95048 | Sorghum | cytosol, nucleus, plastid | 50.19 | 42.9 |
TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 48.68 | 42.86 |
GSMUA_Achr3P13820_001 | Banana | cytosol | 44.91 | 42.65 |
Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 47.55 | 42.42 |
Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 49.43 | 42.26 |
KRH47731 | Soybean | nucleus | 42.26 | 41.95 |
HORVU4Hr1G057110.23 | Barley | nucleus | 47.92 | 40.97 |
KRH06306 | Soybean | nucleus | 41.51 | 40.89 |
GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 24.53 | 40.88 |
TraesCS4D01G198000.3 | Wheat | cytosol | 49.06 | 40.75 |
GSMUA_Achr9P14920_001 | Banana | plastid | 27.17 | 40.68 |
CDX73451 | Canola | cytosol | 36.98 | 39.2 |
CDY02889 | Canola | nucleus | 32.08 | 39.17 |
AT3G54770.1 | Thale cress | nucleus | 37.74 | 38.31 |
Bra007096.1-P | Field mustard | nucleus | 36.98 | 37.84 |
CDX78261 | Canola | nucleus | 36.6 | 37.45 |
CDY64698 | Canola | nucleus | 36.6 | 37.16 |
GSMUA_Achr8P08440_001 | Banana | nucleus | 36.23 | 37.07 |
GSMUA_Achr3P21850_001 | Banana | nucleus | 35.47 | 35.88 |
GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 38.11 | 34.83 |
GSMUA_Achr10P... | Banana | nucleus | 34.34 | 33.58 |
GSMUA_Achr5P17700_001 | Banana | cytosol | 11.7 | 33.33 |
GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 33.96 | 33.33 |
GSMUA_Achr8P23460_001 | Banana | nucleus | 29.43 | 33.05 |
GSMUA_Achr5P05400_001 | Banana | mitochondrion | 30.57 | 30.68 |
GSMUA_AchrUn_... | Banana | mitochondrion | 27.17 | 29.88 |
GSMUA_Achr7P00730_001 | Banana | cytosol | 14.72 | 21.55 |
GSMUA_Achr4P32300_001 | Banana | nucleus | 11.32 | 20.41 |
GSMUA_Achr10P... | Banana | nucleus | 15.47 | 17.75 |
GSMUA_Achr10P... | Banana | nucleus | 16.6 | 17.74 |
GSMUA_Achr9P12880_001 | Banana | cytosol | 13.96 | 16.09 |
GSMUA_Achr5P09540_001 | Banana | nucleus | 22.64 | 15.46 |
GSMUA_Achr9P12410_001 | Banana | nucleus | 19.25 | 15.22 |
GSMUA_Achr7P13480_001 | Banana | nucleus | 19.25 | 15.13 |
GSMUA_Achr1P09440_001 | Banana | cytosol | 19.25 | 15.04 |
GSMUA_AchrUn_... | Banana | cytosol | 18.49 | 14.89 |
GSMUA_Achr5P09550_001 | Banana | nucleus | 20.38 | 14.52 |
GSMUA_Achr10P... | Banana | nucleus | 18.11 | 14.41 |
GSMUA_Achr1P19260_001 | Banana | nucleus | 18.11 | 14.2 |
GSMUA_Achr8P25380_001 | Banana | nucleus | 19.62 | 13.72 |
GSMUA_Achr10P... | Banana | nucleus | 22.26 | 13.41 |
GSMUA_Achr6P24180_001 | Banana | cytosol | 32.45 | 12.89 |
GSMUA_Achr1P10970_001 | Banana | nucleus | 20.38 | 12.39 |
GSMUA_Achr10P... | Banana | nucleus | 20.38 | 11.74 |
GSMUA_Achr2P14710_001 | Banana | cytosol | 15.85 | 11.7 |
GSMUA_AchrUn_... | Banana | nucleus | 18.11 | 11.19 |
GSMUA_Achr6P15950_001 | Banana | nucleus | 19.62 | 11.16 |
GSMUA_Achr6P10970_001 | Banana | nucleus | 20.75 | 11.0 |
GSMUA_Achr4P33100_001 | Banana | nucleus | 18.11 | 10.86 |
GSMUA_Achr4P28100_001 | Banana | nucleus | 18.11 | 10.86 |
GSMUA_Achr4P09210_001 | Banana | nucleus | 17.74 | 10.63 |
GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 16.98 | 10.37 |
GSMUA_Achr4P24260_001 | Banana | cytosol | 12.45 | 10.03 |
GSMUA_Achr3P02300_001 | Banana | nucleus | 20.75 | 8.1 |
GSMUA_Achr5P17690_001 | Banana | nucleus | 9.81 | 6.44 |
Protein Annotations
EnsemblPlants:GSMUA_Achr11P24620_001 | EnsemblPlants:GSMUA_Achr11T24620_001 | EnsemblPlantsGene:GSMUA_Achr11G24620_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
SUPFAM:SSF54928 | UniParc:UPI0002948A08 | UniProt:M0RV42 | MapMan:35.1 | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G24620_001]
Coordinates
chr11:-:24073456..24075037
Molecular Weight (calculated)
27940.0 Da
IEP (calculated)
8.989
GRAVY (calculated)
-0.226
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQQFAETTL TKVFVGGLAW ETQKDALREH FEKYGEILEA VIISDKVTGR SKGYGFVTFK QADAAKKACV DATPVISGRR ANCNLASLGA KRGGLRPSPP
101: STTAPLPSGA HHQPPGTSVS SGSPAAQWYY RHPSGTPPLP SPFHVHHGLL PLYATTAAYG YAPDSAPHSY EYYRSSILSQ GHFQGQLSSY PAQGGMAAPN
201: GGFLPMYHPF YHHQSPGMGV PAHFFPPASA ATAAVATIPT IISEPAAIPP PSAGTHGQSH LCLLI
101: STTAPLPSGA HHQPPGTSVS SGSPAAQWYY RHPSGTPPLP SPFHVHHGLL PLYATTAAYG YAPDSAPHSY EYYRSSILSQ GHFQGQLSSY PAQGGMAAPN
201: GGFLPMYHPF YHHQSPGMGV PAHFFPPASA ATAAVATIPT IISEPAAIPP PSAGTHGQSH LCLLI
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.