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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_13s0019g03610.t01 Wine grape nucleus 45.66 48.99
Solyc04g049920.2.1 Tomato nucleus 43.4 47.72
PGSC0003DMT400027411 Potato nucleus 43.77 45.67
GSMUA_Achr4P09830_001 Banana mitochondrion 25.28 44.37
Zm00001d047753_P001 Maize cytosol, mitochondrion, nucleus 46.04 43.73
TraesCS4B01G197500.2 Wheat cytosol, mitochondrion, nucleus 48.68 43.14
EER95048 Sorghum cytosol, nucleus, plastid 50.19 42.9
TraesCS4A01G106800.2 Wheat cytosol, mitochondrion, nucleus 48.68 42.86
GSMUA_Achr3P13820_001 Banana cytosol 44.91 42.65
Zm00001d028714_P001 Maize cytosol, nucleus, plasma membrane 47.55 42.42
Os03t0286500-01 Rice cytosol, nucleus, plastid 49.43 42.26
KRH47731 Soybean nucleus 42.26 41.95
HORVU4Hr1G057110.23 Barley nucleus 47.92 40.97
KRH06306 Soybean nucleus 41.51 40.89
GSMUA_Achr3P06540_001 Banana nucleus, plastid 24.53 40.88
TraesCS4D01G198000.3 Wheat cytosol 49.06 40.75
GSMUA_Achr9P14920_001 Banana plastid 27.17 40.68
CDX73451 Canola cytosol 36.98 39.2
CDY02889 Canola nucleus 32.08 39.17
AT3G54770.1 Thale cress nucleus 37.74 38.31
Bra007096.1-P Field mustard nucleus 36.98 37.84
CDX78261 Canola nucleus 36.6 37.45
CDY64698 Canola nucleus 36.6 37.16
GSMUA_Achr8P08440_001 Banana nucleus 36.23 37.07
GSMUA_Achr3P21850_001 Banana nucleus 35.47 35.88
GSMUA_Achr8P24330_001 Banana nucleus, plastid 38.11 34.83
GSMUA_Achr10P... Banana nucleus 34.34 33.58
GSMUA_Achr5P17700_001 Banana cytosol 11.7 33.33
GSMUA_Achr6P17510_001 Banana cytosol, mitochondrion, nucleus 33.96 33.33
GSMUA_Achr8P23460_001 Banana nucleus 29.43 33.05
GSMUA_Achr5P05400_001 Banana mitochondrion 30.57 30.68
GSMUA_AchrUn_... Banana mitochondrion 27.17 29.88
GSMUA_Achr7P00730_001 Banana cytosol 14.72 21.55
GSMUA_Achr4P32300_001 Banana nucleus 11.32 20.41
GSMUA_Achr10P... Banana nucleus 15.47 17.75
GSMUA_Achr10P... Banana nucleus 16.6 17.74
GSMUA_Achr9P12880_001 Banana cytosol 13.96 16.09
GSMUA_Achr5P09540_001 Banana nucleus 22.64 15.46
GSMUA_Achr9P12410_001 Banana nucleus 19.25 15.22
GSMUA_Achr7P13480_001 Banana nucleus 19.25 15.13
GSMUA_Achr1P09440_001 Banana cytosol 19.25 15.04
GSMUA_AchrUn_... Banana cytosol 18.49 14.89
GSMUA_Achr5P09550_001 Banana nucleus 20.38 14.52
GSMUA_Achr10P... Banana nucleus 18.11 14.41
GSMUA_Achr1P19260_001 Banana nucleus 18.11 14.2
GSMUA_Achr8P25380_001 Banana nucleus 19.62 13.72
GSMUA_Achr10P... Banana nucleus 22.26 13.41
GSMUA_Achr6P24180_001 Banana cytosol 32.45 12.89
GSMUA_Achr1P10970_001 Banana nucleus 20.38 12.39
GSMUA_Achr10P... Banana nucleus 20.38 11.74
GSMUA_Achr2P14710_001 Banana cytosol 15.85 11.7
GSMUA_AchrUn_... Banana nucleus 18.11 11.19
GSMUA_Achr6P15950_001 Banana nucleus 19.62 11.16
GSMUA_Achr6P10970_001 Banana nucleus 20.75 11.0
GSMUA_Achr4P33100_001 Banana nucleus 18.11 10.86
GSMUA_Achr4P28100_001 Banana nucleus 18.11 10.86
GSMUA_Achr4P09210_001 Banana nucleus 17.74 10.63
GSMUA_Achr10P... Banana mitochondrion, nucleus 16.98 10.37
GSMUA_Achr4P24260_001 Banana cytosol 12.45 10.03
GSMUA_Achr3P02300_001 Banana nucleus 20.75 8.1
GSMUA_Achr5P17690_001 Banana nucleus 9.81 6.44
Protein Annotations
EnsemblPlants:GSMUA_Achr11P24620_001EnsemblPlants:GSMUA_Achr11T24620_001EnsemblPlantsGene:GSMUA_Achr11G24620_001Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR44374PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928UniParc:UPI0002948A08UniProt:M0RV42MapMan:35.1::
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G24620_001]
Coordinates
chr11:-:24073456..24075037
Molecular Weight (calculated)
27940.0 Da
IEP (calculated)
8.989
GRAVY (calculated)
-0.226
Length
265 amino acids
Sequence
(BLAST)
001: MGQQFAETTL TKVFVGGLAW ETQKDALREH FEKYGEILEA VIISDKVTGR SKGYGFVTFK QADAAKKACV DATPVISGRR ANCNLASLGA KRGGLRPSPP
101: STTAPLPSGA HHQPPGTSVS SGSPAAQWYY RHPSGTPPLP SPFHVHHGLL PLYATTAAYG YAPDSAPHSY EYYRSSILSQ GHFQGQLSSY PAQGGMAAPN
201: GGFLPMYHPF YHHQSPGMGV PAHFFPPASA ATAAVATIPT IISEPAAIPP PSAGTHGQSH LCLLI
Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.