Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02889 | Canola | nucleus | 75.86 | 91.24 |
| CDX73451 | Canola | cytosol | 82.76 | 86.4 |
| CDX78261 | Canola | nucleus | 81.99 | 82.63 |
| AT3G54770.1 | Thale cress | nucleus | 80.84 | 80.84 |
| Solyc04g049920.2.1 | Tomato | nucleus | 44.83 | 48.55 |
| PGSC0003DMT400027411 | Potato | nucleus | 46.36 | 47.64 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 44.44 | 46.96 |
| CDY51790 | Canola | cytosol | 17.62 | 42.99 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.62 | 41.07 |
| KRH06306 | Soybean | nucleus | 42.15 | 40.89 |
| KRH47731 | Soybean | nucleus | 41.76 | 40.82 |
| CDY31859 | Canola | nucleus | 34.48 | 37.34 |
| CDX96615 | Canola | nucleus | 36.02 | 37.3 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 39.46 | 36.92 |
| GSMUA_Achr11P... | Banana | nucleus | 37.16 | 36.6 |
| CDY01349 | Canola | nucleus | 33.33 | 36.1 |
| CDY33653 | Canola | nucleus | 34.87 | 35.97 |
| CDY31508 | Canola | nucleus | 34.1 | 35.6 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 37.93 | 35.48 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 40.61 | 35.45 |
| CDY69197 | Canola | nucleus | 30.27 | 35.11 |
| CDX88283 | Canola | nucleus | 37.55 | 35.0 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 40.23 | 34.88 |
| CDY29496 | Canola | nucleus | 34.87 | 34.87 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 39.46 | 34.68 |
| CDY04769 | Canola | nucleus | 31.03 | 34.18 |
| CDX73279 | Canola | cytosol | 31.42 | 33.88 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 40.61 | 33.23 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 39.46 | 33.23 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 39.08 | 32.9 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 38.7 | 32.58 |
| CDY25759 | Canola | nucleus | 30.27 | 31.73 |
| CDY41556 | Canola | nucleus | 34.48 | 31.03 |
| CDX87594 | Canola | nucleus | 37.16 | 30.31 |
| CDX79253 | Canola | nucleus | 32.18 | 30.0 |
| CDX88432 | Canola | nucleus | 32.57 | 29.93 |
| CDX87460 | Canola | nucleus | 32.57 | 29.82 |
| CDY46642 | Canola | nucleus | 32.57 | 29.41 |
| CDX68024 | Canola | nucleus | 31.8 | 29.33 |
| CDX80046 | Canola | nucleus | 34.87 | 28.8 |
| CDY41557 | Canola | nucleus | 34.87 | 28.8 |
| CDY21356 | Canola | nucleus | 31.8 | 28.62 |
| CDY48016 | Canola | nucleus | 35.63 | 28.53 |
| CDY27523 | Canola | nucleus | 35.25 | 28.48 |
| CDY00446 | Canola | nucleus | 32.57 | 25.0 |
| CDY67263 | Canola | nucleus | 30.65 | 24.39 |
| CDY13339 | Canola | mitochondrion | 10.73 | 16.67 |
| CDY24657 | Canola | nucleus | 19.54 | 15.0 |
| CDY05301 | Canola | nucleus | 19.92 | 14.81 |
| CDY55846 | Canola | nucleus | 21.84 | 14.21 |
| CDY25867 | Canola | nucleus | 21.84 | 14.07 |
| CDY26001 | Canola | nucleus | 21.84 | 14.0 |
| CDY24106 | Canola | nucleus | 21.84 | 13.8 |
| CDY21399 | Canola | mitochondrion | 7.66 | 13.79 |
| CDX76950 | Canola | nucleus | 15.71 | 13.31 |
| CDX74070 | Canola | cytosol | 18.01 | 13.06 |
| CDX75170 | Canola | extracellular | 8.05 | 12.88 |
| CDY12068 | Canola | nucleus | 17.62 | 12.85 |
| CDY08023 | Canola | nucleus | 17.62 | 12.78 |
| CDY24201 | Canola | nucleus | 17.62 | 12.71 |
| CDY13782 | Canola | nucleus | 14.94 | 12.7 |
| CDY43360 | Canola | nucleus | 17.24 | 12.43 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 16.48 | 12.43 |
| CDY26229 | Canola | nucleus | 17.62 | 12.4 |
| CDY48318 | Canola | nucleus | 17.62 | 12.37 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.86 | 12.12 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.86 | 12.09 |
| CDY50131 | Canola | nucleus | 17.62 | 12.04 |
| CDY06947 | Canola | nucleus | 19.54 | 11.86 |
| CDY27186 | Canola | nucleus | 20.31 | 11.8 |
| CDX90262 | Canola | nucleus | 17.24 | 11.78 |
| CDX72106 | Canola | nucleus | 20.31 | 11.65 |
| CDY67299 | Canola | nucleus | 16.86 | 11.55 |
| CDY57580 | Canola | nucleus | 19.54 | 11.51 |
| CDY37724 | Canola | nucleus | 14.18 | 11.46 |
| CDY17173 | Canola | nucleus | 16.48 | 11.41 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.71 | 11.29 |
| CDY23739 | Canola | nucleus | 16.48 | 11.23 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 17.62 | 11.19 |
| CDX76015 | Canola | nucleus | 13.03 | 11.15 |
| CDY15850 | Canola | nucleus | 15.71 | 11.08 |
| CDY07975 | Canola | nucleus | 19.92 | 11.04 |
| CDX84689 | Canola | nucleus | 17.24 | 11.03 |
| CDX74030 | Canola | nucleus | 19.92 | 11.02 |
| CDY22136 | Canola | nucleus | 20.31 | 10.91 |
| CDX79527 | Canola | nucleus | 16.86 | 10.84 |
| CDY35966 | Canola | nucleus | 20.31 | 10.73 |
| CDY36753 | Canola | nucleus | 17.62 | 10.57 |
| CDY42724 | Canola | cytosol | 15.33 | 10.55 |
| CDY46690 | Canola | nucleus | 17.24 | 10.51 |
| CDY69852 | Canola | cytosol | 15.33 | 10.47 |
| CDY66272 | Canola | nucleus | 19.54 | 10.43 |
| CDY11989 | Canola | nucleus | 16.86 | 10.19 |
| CDX69279 | Canola | nucleus | 9.2 | 10.17 |
| CDX77783 | Canola | nucleus | 16.48 | 10.12 |
| CDX92807 | Canola | nucleus | 17.24 | 10.0 |
| CDY46689 | Canola | nucleus | 17.62 | 9.94 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 15.71 | 9.88 |
| CDY41059 | Canola | nucleus | 16.09 | 9.84 |
| CDX94301 | Canola | nucleus | 16.48 | 9.73 |
| CDY36357 | Canola | nucleus | 19.92 | 9.59 |
| CDY42577 | Canola | nucleus | 19.92 | 9.54 |
| CDX89316 | Canola | endoplasmic reticulum | 15.71 | 9.17 |
| CDY47382 | Canola | golgi, plastid | 14.18 | 8.89 |
| CDY28918 | Canola | mitochondrion | 16.09 | 8.68 |
| CDY25957 | Canola | nucleus | 15.33 | 7.23 |
| CDY40554 | Canola | nucleus | 16.09 | 6.4 |
| CDX69277 | Canola | mitochondrion | 2.68 | 3.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JAV9 | UniProt:A0A078JAV9 | EnsemblPlants:CDY64698 | ProteinID:CDY64698 |
| ProteinID:CDY64698.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00042569001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDBF0C | SEG:seg |
Description
BnaA04g27710DBnaA04g27710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAV9]
Coordinates
chrLK034524:+:23605..26385
Molecular Weight (calculated)
29057.4 Da
IEP (calculated)
9.836
GRAVY (calculated)
-0.607
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSDNVSGC FGDTKLTKVF VGGLAWDTQK EAMHDHFIKY GDILEAVVIF DKLTRRSKGY GFVTFKDAEA AKRACEDPTP IINGRRSNCN LASLGGRHRR
101: SPTTMASPQQ GSKNVSRATS GHVGNNQAQW YYPVGFTHQQ HQHQLQRQHH HQAVPFYGYP SSYVAPNMTF NQKVGYVGGT YMNGYYAQPQ PQPLPQPQYY
201: HHMYGGGRVM VAASPTMMPL YTVYPYHQSP AIGFPQPSFT KHIPTHPISG TVGGDSIMRK A
101: SPTTMASPQQ GSKNVSRATS GHVGNNQAQW YYPVGFTHQQ HQHQLQRQHH HQAVPFYGYP SSYVAPNMTF NQKVGYVGGT YMNGYYAQPQ PQPLPQPQYY
201: HHMYGGGRVM VAASPTMMPL YTVYPYHQSP AIGFPQPSFT KHIPTHPISG TVGGDSIMRK A
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.