Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 20.23 | 89.74 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 81.79 | 77.96 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 80.92 | 77.14 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 80.35 | 76.37 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 65.9 | 63.33 |
| PGSC0003DMT400012586 | Potato | nucleus | 42.77 | 43.02 |
| Solyc04g077520.2.1 | Tomato | nucleus | 42.2 | 42.82 |
| CDX75170 | Canola | extracellular | 15.32 | 32.52 |
| CDY12068 | Canola | nucleus | 30.64 | 29.61 |
| CDX90262 | Canola | nucleus | 31.21 | 28.27 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 36.42 | 26.75 |
| CDY50131 | Canola | nucleus | 28.9 | 26.18 |
| CDY23739 | Canola | nucleus | 28.9 | 26.11 |
| CDY17173 | Canola | nucleus | 27.75 | 25.46 |
| CDY67299 | Canola | nucleus | 28.03 | 25.46 |
| CDX79527 | Canola | nucleus | 29.19 | 24.88 |
| CDX84689 | Canola | nucleus | 29.19 | 24.75 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 29.19 | 24.57 |
| CDY51790 | Canola | cytosol | 7.51 | 24.3 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.8 | 24.11 |
| CDY43360 | Canola | nucleus | 24.57 | 23.48 |
| CDY24201 | Canola | nucleus | 24.57 | 23.48 |
| CDY41059 | Canola | nucleus | 28.61 | 23.18 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 27.75 | 23.13 |
| CDY07975 | Canola | nucleus | 31.21 | 22.93 |
| CDX74030 | Canola | nucleus | 31.21 | 22.88 |
| CDY11989 | Canola | nucleus | 28.32 | 22.69 |
| CDY46690 | Canola | nucleus | 28.03 | 22.66 |
| CDY26229 | Canola | nucleus | 24.28 | 22.64 |
| CDY22136 | Canola | nucleus | 31.79 | 22.63 |
| CDY37724 | Canola | nucleus | 21.1 | 22.6 |
| CDX77783 | Canola | nucleus | 27.75 | 22.59 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 21.1 | 22.53 |
| CDY48318 | Canola | nucleus | 23.99 | 22.31 |
| CDY36753 | Canola | nucleus | 28.03 | 22.3 |
| CDX94301 | Canola | nucleus | 28.32 | 22.17 |
| CDX89316 | Canola | endoplasmic reticulum | 28.61 | 22.15 |
| CDX92807 | Canola | nucleus | 28.61 | 22.0 |
| CDY66272 | Canola | nucleus | 30.92 | 21.88 |
| CDY35966 | Canola | nucleus | 31.21 | 21.86 |
| CDY46689 | Canola | nucleus | 28.9 | 21.6 |
| CDY28918 | Canola | mitochondrion | 28.03 | 20.04 |
| CDY42724 | Canola | cytosol | 19.94 | 18.21 |
| CDY25759 | Canola | nucleus | 13.01 | 18.07 |
| CDY69852 | Canola | cytosol | 19.94 | 18.06 |
| CDY31859 | Canola | nucleus | 12.43 | 17.84 |
| CDY69197 | Canola | nucleus | 11.56 | 17.78 |
| CDX73279 | Canola | cytosol | 12.43 | 17.77 |
| CDY25957 | Canola | nucleus | 28.03 | 17.54 |
| CDY02889 | Canola | nucleus | 10.98 | 17.51 |
| CDY04769 | Canola | nucleus | 11.85 | 17.3 |
| CDY01349 | Canola | nucleus | 11.85 | 17.01 |
| CDX69279 | Canola | nucleus | 11.56 | 16.95 |
| CDX73451 | Canola | cytosol | 12.14 | 16.8 |
| CDX78261 | Canola | nucleus | 12.43 | 16.6 |
| CDY64698 | Canola | nucleus | 12.43 | 16.48 |
| CDY31508 | Canola | nucleus | 11.85 | 16.4 |
| CDX96615 | Canola | nucleus | 11.85 | 16.27 |
| CDX88283 | Canola | nucleus | 13.01 | 16.07 |
| CDY36357 | Canola | nucleus | 25.14 | 16.05 |
| CDY42577 | Canola | nucleus | 25.14 | 15.96 |
| CDY33653 | Canola | nucleus | 11.27 | 15.41 |
| CDY29496 | Canola | nucleus | 11.56 | 15.33 |
| CDY40554 | Canola | nucleus | 27.75 | 14.63 |
| CDY41556 | Canola | nucleus | 11.85 | 14.14 |
| CDY25867 | Canola | nucleus | 16.18 | 13.83 |
| CDX87594 | Canola | nucleus | 12.72 | 13.75 |
| CDY67263 | Canola | nucleus | 13.01 | 13.72 |
| CDY55846 | Canola | nucleus | 15.9 | 13.72 |
| CDX74070 | Canola | cytosol | 14.16 | 13.61 |
| CDY24106 | Canola | nucleus | 15.9 | 13.32 |
| CDY26001 | Canola | nucleus | 15.32 | 13.02 |
| CDY27523 | Canola | nucleus | 12.14 | 13.0 |
| CDY41557 | Canola | nucleus | 11.85 | 12.97 |
| CDX80046 | Canola | nucleus | 11.85 | 12.97 |
| CDY48016 | Canola | nucleus | 12.14 | 12.88 |
| CDX79253 | Canola | nucleus | 10.4 | 12.86 |
| CDY08023 | Canola | nucleus | 13.29 | 12.78 |
| CDX88432 | Canola | nucleus | 10.4 | 12.68 |
| CDX87460 | Canola | nucleus | 10.4 | 12.63 |
| CDX68024 | Canola | nucleus | 10.12 | 12.37 |
| CDY27186 | Canola | nucleus | 15.61 | 12.03 |
| CDX76950 | Canola | nucleus | 10.69 | 12.01 |
| CDX72106 | Canola | nucleus | 15.61 | 11.87 |
| CDY06947 | Canola | nucleus | 14.74 | 11.86 |
| CDY57580 | Canola | nucleus | 14.74 | 11.51 |
| CDY46642 | Canola | nucleus | 9.54 | 11.42 |
| CDY13782 | Canola | nucleus | 10.12 | 11.4 |
| CDY05301 | Canola | nucleus | 11.27 | 11.11 |
| CDY21356 | Canola | nucleus | 9.25 | 11.03 |
| CDY24657 | Canola | nucleus | 10.69 | 10.88 |
| CDX76015 | Canola | nucleus | 9.25 | 10.49 |
| CDY13339 | Canola | mitochondrion | 4.91 | 10.12 |
| CDY00446 | Canola | nucleus | 9.25 | 9.41 |
| CDY15850 | Canola | nucleus | 9.83 | 9.19 |
| CDY21399 | Canola | mitochondrion | 3.76 | 8.97 |
| CDY47382 | Canola | golgi, plastid | 10.4 | 8.65 |
| CDX69277 | Canola | mitochondrion | 3.18 | 5.91 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078I8Z3 | UniProt:A0A078I8Z3 | EnsemblPlants:CDY45879 | ProteinID:CDY45879 |
| ProteinID:CDY45879.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00082855001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEC0F0 | SEG:seg |
Description
BnaC01g28150DBnaC01g28150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8Z3]
Coordinates
chrLK032640:+:38430..39654
Molecular Weight (calculated)
38892.1 Da
IEP (calculated)
8.663
GRAVY (calculated)
-0.541
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCDRYELFI GGIPRGTSEE SLKQHFSRYG SVLGAVVAKE KATGQPRGFG FVRFANAYEV DKALRDSHYI LGRAVDVKKA IPKHEHMRQQ LNVQPYLSQV
101: QQNNDGGVHE MLINGNNYHR TKKLFVGGLS SETTKEEFKT YFEKFGRITD VVVMHDSVTN RPRGFGFVTY DSENSVEIVM QSNFHELSNK RVEVKRAIPK
201: EGIQINNGGN HSLPPTYNSF QTTPYVHGRN GYELTAQYPP VFAYHHGFQG FHYPYGYPVT AQGPTVPWNN LIMPPTPGFY CPPPPPPTTN AHCYLPYMNG
301: FDHVGMSVTA FNAVPWPVGG DGAVAILPRL EDLKLEVPNQ GHKRMN
101: QQNNDGGVHE MLINGNNYHR TKKLFVGGLS SETTKEEFKT YFEKFGRITD VVVMHDSVTN RPRGFGFVTY DSENSVEIVM QSNFHELSNK RVEVKRAIPK
201: EGIQINNGGN HSLPPTYNSF QTTPYVHGRN GYELTAQYPP VFAYHHGFQG FHYPYGYPVT AQGPTVPWNN LIMPPTPGFY CPPPPPPTTN AHCYLPYMNG
301: FDHVGMSVTA FNAVPWPVGG DGAVAILPRL EDLKLEVPNQ GHKRMN
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.