Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016954.1-P | Field mustard | nucleus | 98.14 | 95.91 |
| CDY57580 | Canola | nucleus | 92.79 | 90.07 |
| AT2G41060.3 | Thale cress | nucleus | 76.28 | 72.73 |
| CDY27186 | Canola | nucleus | 66.05 | 63.25 |
| CDX72106 | Canola | nucleus | 66.74 | 63.08 |
| CDX76015 | Canola | nucleus | 44.19 | 62.3 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 55.81 | 51.84 |
| KRG94993 | Soybean | nucleus | 55.35 | 49.69 |
| KRH66628 | Soybean | nucleus | 54.88 | 48.56 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 50.93 | 47.0 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 46.74 | 44.27 |
| CDY47382 | Canola | golgi, plastid | 42.56 | 43.99 |
| EES02736 | Sorghum | plastid | 46.51 | 43.1 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 47.67 | 42.71 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 44.88 | 42.6 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 48.14 | 42.42 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 47.21 | 42.29 |
| Os01t0265800-01 | Rice | nucleus | 46.74 | 41.02 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 39.53 | 39.17 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.53 | 36.61 |
| CDY51790 | Canola | cytosol | 9.07 | 36.45 |
| HORVU6Hr1G054690.5 | Barley | plastid | 15.35 | 35.11 |
| GSMUA_Achr10P... | Banana | nucleus | 18.6 | 34.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.79 | 32.87 |
| CDY55846 | Canola | nucleus | 30.23 | 32.42 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 33.26 | 32.35 |
| CDY26001 | Canola | nucleus | 30.23 | 31.94 |
| CDY24106 | Canola | nucleus | 30.23 | 31.48 |
| Os02t0602600-00 | Rice | nucleus | 28.14 | 31.35 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 30.0 | 31.16 |
| Os04t0636900-02 | Rice | nucleus | 37.21 | 31.07 |
| KXG30578 | Sorghum | nucleus | 26.74 | 30.91 |
| CDY25867 | Canola | nucleus | 29.07 | 30.86 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 36.05 | 30.45 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 36.05 | 30.45 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 36.05 | 30.45 |
| CDY13782 | Canola | nucleus | 21.16 | 29.64 |
| EES12939 | Sorghum | nucleus | 36.28 | 29.6 |
| Zm00001d002141_P006 | Maize | nucleus | 35.81 | 29.56 |
| CDX76950 | Canola | nucleus | 20.93 | 29.22 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 35.12 | 28.98 |
| EES10068 | Sorghum | nucleus | 26.98 | 26.91 |
| CDY31859 | Canola | nucleus | 13.49 | 24.07 |
| CDY15850 | Canola | nucleus | 20.7 | 24.05 |
| CDY31508 | Canola | nucleus | 13.49 | 23.2 |
| CDY33653 | Canola | nucleus | 13.49 | 22.92 |
| CDY01349 | Canola | nucleus | 12.79 | 22.82 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 21.16 | 22.41 |
| CDX96615 | Canola | nucleus | 13.02 | 22.22 |
| CDY29496 | Canola | nucleus | 13.26 | 21.84 |
| CDY69197 | Canola | nucleus | 11.4 | 21.78 |
| CDY02889 | Canola | nucleus | 10.93 | 21.66 |
| CDY04769 | Canola | nucleus | 11.63 | 21.1 |
| CDX73451 | Canola | cytosol | 12.09 | 20.8 |
| CDX88283 | Canola | nucleus | 13.49 | 20.71 |
| CDX78261 | Canola | nucleus | 12.33 | 20.46 |
| CDY24201 | Canola | nucleus | 16.98 | 20.17 |
| CDY43360 | Canola | nucleus | 16.98 | 20.17 |
| CDY64698 | Canola | nucleus | 11.86 | 19.54 |
| CDX73279 | Canola | cytosol | 10.93 | 19.42 |
| CDY41556 | Canola | nucleus | 13.02 | 19.31 |
| CDY48318 | Canola | nucleus | 16.51 | 19.09 |
| CDY25759 | Canola | nucleus | 10.93 | 18.88 |
| CDY26229 | Canola | nucleus | 16.28 | 18.87 |
| CDX87594 | Canola | nucleus | 13.72 | 18.44 |
| CDX75170 | Canola | extracellular | 6.98 | 18.4 |
| CDX68024 | Canola | nucleus | 12.09 | 18.37 |
| CDX88432 | Canola | nucleus | 11.86 | 17.96 |
| CDX87460 | Canola | nucleus | 11.86 | 17.89 |
| CDX79253 | Canola | nucleus | 11.63 | 17.86 |
| CDX80046 | Canola | nucleus | 13.02 | 17.72 |
| CDY41557 | Canola | nucleus | 13.02 | 17.72 |
| CDY12068 | Canola | nucleus | 14.65 | 17.6 |
| CDX90262 | Canola | nucleus | 15.35 | 17.28 |
| CDY27523 | Canola | nucleus | 12.79 | 17.03 |
| CDY46642 | Canola | nucleus | 11.4 | 16.95 |
| CDY48016 | Canola | nucleus | 12.79 | 16.87 |
| CDY23739 | Canola | nucleus | 14.88 | 16.71 |
| CDY21356 | Canola | nucleus | 11.16 | 16.55 |
| CDY67299 | Canola | nucleus | 14.65 | 16.54 |
| CDY50131 | Canola | nucleus | 14.65 | 16.49 |
| CDY37724 | Canola | nucleus | 12.33 | 16.41 |
| CDY42724 | Canola | cytosol | 14.42 | 16.36 |
| CDY69852 | Canola | cytosol | 14.42 | 16.23 |
| CDX79527 | Canola | nucleus | 15.12 | 16.01 |
| CDY17173 | Canola | nucleus | 13.95 | 15.92 |
| CDY36357 | Canola | nucleus | 19.77 | 15.68 |
| CDY42577 | Canola | nucleus | 19.77 | 15.6 |
| CDY07975 | Canola | nucleus | 16.98 | 15.5 |
| CDX74030 | Canola | nucleus | 16.98 | 15.47 |
| CDY22136 | Canola | nucleus | 17.21 | 15.23 |
| CDX84689 | Canola | nucleus | 14.42 | 15.2 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 14.42 | 15.09 |
| CDY35966 | Canola | nucleus | 17.21 | 14.98 |
| CDY66272 | Canola | nucleus | 16.98 | 14.93 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 11.86 | 14.74 |
| CDX74070 | Canola | cytosol | 12.33 | 14.72 |
| CDY08023 | Canola | nucleus | 12.33 | 14.72 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.33 | 14.56 |
| CDX69279 | Canola | nucleus | 7.91 | 14.41 |
| CDY67263 | Canola | nucleus | 10.93 | 14.33 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.09 | 14.33 |
| CDY00446 | Canola | nucleus | 11.16 | 14.12 |
| CDX94301 | Canola | nucleus | 14.19 | 13.8 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.63 | 13.77 |
| CDY11989 | Canola | nucleus | 13.49 | 13.43 |
| CDY05301 | Canola | nucleus | 10.93 | 13.39 |
| CDY41059 | Canola | nucleus | 13.26 | 13.35 |
| CDY36753 | Canola | nucleus | 13.49 | 13.33 |
| CDX92807 | Canola | nucleus | 13.72 | 13.11 |
| CDY46690 | Canola | nucleus | 13.02 | 13.08 |
| CDX89316 | Canola | endoplasmic reticulum | 13.49 | 12.98 |
| CDX77783 | Canola | nucleus | 12.79 | 12.94 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 12.33 | 12.77 |
| CDY46689 | Canola | nucleus | 13.72 | 12.74 |
| CDY24657 | Canola | nucleus | 10.0 | 12.65 |
| CDY28918 | Canola | mitochondrion | 12.79 | 11.36 |
| CDX69277 | Canola | mitochondrion | 4.42 | 10.22 |
| CDY25957 | Canola | nucleus | 13.02 | 10.13 |
| CDY13339 | Canola | mitochondrion | 3.95 | 10.12 |
| CDY21399 | Canola | mitochondrion | 3.02 | 8.97 |
| CDY40554 | Canola | nucleus | 12.56 | 8.23 |
Protein Annotations
| EnsemblPlants:CDY06947 | EnsemblPlantsGene:GSBRNA2T00123251001 | Gene3D:3.30.70.330 | GO:A0A078F1E0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY06947 | ProteinID:CDY06947.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF2CF1 | MapMan:35.1 | : |
Description
BnaA04g23680D
Coordinates
chrLK031974:-:339154..341518
Molecular Weight (calculated)
46291.8 Da
IEP (calculated)
6.660
GRAVY (calculated)
-0.754
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKKRKLEP QSNDASEPPQ KQQQLENGDE DIIITTEIHE NENENQRPDE DDEEPIEDLL EPFSKEQLSI LLKEAAQKHP DVADRIRIAA DEDPVHRKIF
101: VHGFGWDTKA DALIKAFKQY GEIEDCKCVV DKGTGQSKGY GFILFKSRSG ARSALKQPQK KIGTRMAACQ LASMGPVQGG NSAAAAAAGA TSQHFNPEHV
201: QRKIYVSNVS ADIDPERLLE FFSRFGEVEE GPLGLDKATG RPKGFTLFVY KTAESAKKAL EEPHKSFEGH VLHCHKANDG PKPVKQQHQH QQQHRHSSYD
301: QSSRYRRDDN AGYGATGGHG HYLAGNNQAA ALNPAIGQAI TALLASQGAG VGMNQAFGQA LLGTLGAPSP GTGGGMPSGY GGQANITPGV FPGYGYEASF
401: QGGYQTQQPG QGSAGRGQHG LGYGGQYMGQ
101: VHGFGWDTKA DALIKAFKQY GEIEDCKCVV DKGTGQSKGY GFILFKSRSG ARSALKQPQK KIGTRMAACQ LASMGPVQGG NSAAAAAAGA TSQHFNPEHV
201: QRKIYVSNVS ADIDPERLLE FFSRFGEVEE GPLGLDKATG RPKGFTLFVY KTAESAKKAL EEPHKSFEGH VLHCHKANDG PKPVKQQHQH QQQHRHSSYD
301: QSSRYRRDDN AGYGATGGHG HYLAGNNQAA ALNPAIGQAI TALLASQGAG VGMNQAFGQA LLGTLGAPSP GTGGGMPSGY GGQANITPGV FPGYGYEASF
401: QGGYQTQQPG QGSAGRGQHG LGYGGQYMGQ
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.