Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G181900.1 | Wheat | nucleus | 92.01 | 93.54 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 86.68 | 93.38 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 91.8 | 93.33 |
| Os01t0265800-01 | Rice | nucleus | 70.08 | 69.8 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 63.93 | 68.72 |
| EES02736 | Sorghum | plastid | 63.93 | 67.24 |
| CDX76015 | Canola | nucleus | 31.35 | 50.16 |
| KRG94993 | Soybean | nucleus | 47.75 | 48.64 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 46.11 | 48.6 |
| Solyc01g008970.2.1 | Tomato | nucleus | 37.3 | 48.4 |
| KRH66628 | Soybean | nucleus | 48.16 | 48.35 |
| Bra014667.1-P | Field mustard | nucleus | 30.12 | 48.2 |
| CDY06947 | Canola | nucleus | 42.42 | 48.14 |
| CDY27186 | Canola | nucleus | 43.85 | 47.66 |
| CDX72106 | Canola | nucleus | 44.26 | 47.47 |
| Bra007277.1-P | Field mustard | nucleus | 43.44 | 47.22 |
| Bra016954.1-P | Field mustard | nucleus | 42.42 | 47.05 |
| AT2G41060.3 | Thale cress | nucleus | 43.24 | 46.78 |
| CDY57580 | Canola | nucleus | 42.21 | 46.5 |
| AT3G56860.10 | Thale cress | nucleus | 44.47 | 45.4 |
| PGSC0003DMT400058431 | Potato | nucleus | 44.88 | 44.69 |
| KRH14673 | Soybean | nucleus | 44.88 | 44.33 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 46.72 | 44.02 |
| KRH73477 | Soybean | nucleus | 44.26 | 43.55 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 5.53 | 40.3 |
| HORVU6Hr1G054690.5 | Barley | plastid | 13.73 | 35.64 |
| CDY47382 | Canola | golgi, plastid | 30.33 | 35.58 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 26.23 | 30.92 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 27.66 | 30.61 |
| HORVU6Hr1G070140.3 | Barley | plastid | 7.58 | 23.72 |
| HORVU6Hr1G070150.1 | Barley | plastid | 7.99 | 23.35 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 18.44 | 22.17 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 17.01 | 20.8 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 11.68 | 19.06 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 13.52 | 18.64 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 16.8 | 17.71 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 13.11 | 17.58 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 13.11 | 17.25 |
| HORVU6Hr1G040220.5 | Barley | plastid | 16.19 | 17.03 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 10.25 | 17.01 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 9.43 | 16.79 |
| HORVU6Hr1G078060.1 | Barley | plastid | 10.86 | 16.77 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 11.27 | 15.19 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 10.25 | 15.06 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 9.43 | 14.84 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 8.81 | 13.74 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 13.93 | 13.33 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 9.63 | 12.63 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AK360198 | ncoils:Coil | UniProt:F2D8I6 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:HORVU3Hr1G037280 | EnsemblPlants:HORVU3Hr1G037280.1 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF4 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00020058C0 | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D8I6]
Coordinates
chrchr3H:+:211530600..211535856
Molecular Weight (calculated)
50550.3 Da
IEP (calculated)
4.788
GRAVY (calculated)
-0.461
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKLEPK STLAANSSAA KASAAPKIAE PAAPPPQPET LAEYYRPSSQ TVTKESGSIS RGAAVKEEVG GEEDEWEEVE EEVEEEEEEE EAEVEEEEQQ
101: QTEEAEEGDS DPASIQELLE VFPKEQLVEL LRDAAVGHRD VLESVRRAAD ADPAQRKIFV HGLGWDTTVD ILTEAFRPYG EIEDLKLVSD RNTGKCKGYG
201: FILFRRRSGA RAALLEPQKK IGNRTTSCQL ASLGPVPSGG AANNPMLATA PALAPAALIL PPVSEYTQRK IFVSNVGADI DPQKLLQFFS KYGEIEEGPL
301: GLDKATGKPK GFALFVYRTL EGAKKALQEP HKSFEGVVLH CQKAIDGPKP NRGGGHGATT TIERKGAAGY SASSRSLPGN VGAGYGMASP ASLSSMPGAV
401: PGGPGMNPAL GQALTAFLAT QGGGLGLNNI LGVGPNSSGV PNSGSSGALG GGGGGGVPGM PGGYMGGYGG GGGYGGPPGG PGRNYMGH
101: QTEEAEEGDS DPASIQELLE VFPKEQLVEL LRDAAVGHRD VLESVRRAAD ADPAQRKIFV HGLGWDTTVD ILTEAFRPYG EIEDLKLVSD RNTGKCKGYG
201: FILFRRRSGA RAALLEPQKK IGNRTTSCQL ASLGPVPSGG AANNPMLATA PALAPAALIL PPVSEYTQRK IFVSNVGADI DPQKLLQFFS KYGEIEEGPL
301: GLDKATGKPK GFALFVYRTL EGAKKALQEP HKSFEGVVLH CQKAIDGPKP NRGGGHGATT TIERKGAAGY SASSRSLPGN VGAGYGMASP ASLSSMPGAV
401: PGGPGMNPAL GQALTAFLAT QGGGLGLNNI LGVGPNSSGV PNSGSSGALG GGGGGGVPGM PGGYMGGYGG GGGYGGPPGG PGRNYMGH
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.