Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G281300.1 | Wheat | nucleus | 94.35 | 94.08 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 92.94 | 94.0 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 94.35 | 93.82 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 70.06 | 64.75 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 56.21 | 57.18 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 41.24 | 56.59 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 56.5 | 55.71 |
| OQU81002 | Sorghum | nucleus | 51.69 | 54.63 |
| PGSC0003DMT400044868 | Potato | nucleus | 51.41 | 53.22 |
| Solyc07g045240.2.1 | Tomato | nucleus | 51.13 | 52.77 |
| AT3G13224.2 | Thale cress | nucleus | 53.11 | 52.51 |
| KRH17717 | Soybean | nucleus | 51.69 | 51.99 |
| Bra039380.1-P | Field mustard | nucleus | 51.98 | 50.83 |
| CDY24201 | Canola | nucleus | 51.98 | 50.83 |
| CDY43360 | Canola | nucleus | 51.98 | 50.83 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 31.36 | 48.26 |
| Os08t0492100-02 | Rice | nucleus | 45.2 | 36.7 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 40.68 | 36.09 |
| HORVU6Hr1G040220.5 | Barley | plastid | 44.63 | 34.05 |
| PGSC0003DMT400044866 | Potato | extracellular | 51.13 | 33.9 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 30.51 | 29.11 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 5.37 | 28.36 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 25.14 | 23.92 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 30.79 | 23.54 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 30.51 | 21.18 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 21.75 | 20.75 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 20.34 | 19.89 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 20.34 | 19.78 |
| HORVU6Hr1G054690.5 | Barley | plastid | 10.17 | 19.15 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 13.56 | 16.33 |
| HORVU6Hr1G070150.1 | Barley | plastid | 7.63 | 16.17 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 19.77 | 15.87 |
| HORVU6Hr1G078060.1 | Barley | plastid | 13.28 | 14.87 |
| HORVU6Hr1G070140.3 | Barley | plastid | 6.5 | 14.74 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 12.99 | 14.7 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 12.15 | 14.38 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 12.99 | 13.86 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 18.64 | 13.52 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 10.45 | 13.5 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 11.02 | 12.58 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 14.12 | 12.08 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 10.73 | 9.36 |
Protein Annotations
| EMBL:AK367676 | EnsemblPlants:HORVU7Hr1G060930.1 | EnsemblPlantsGene:HORVU7Hr1G060930 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002007063 | UniProt:F2DUV8 | MapMan:35.1 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DUV8]
Coordinates
chrchr7H:-:282788544..282794868
Molecular Weight (calculated)
38376.7 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.696
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSEARPKD HGGRDVGGSG SPGKIFVGGL PRDTTLATFQ KHFGNYGVIV DSVIMKNKQT SQPRGFGFIT YSDPAVVDKV MEDTHVINGK QVEIKRTIPK
101: DYMKSNPKDF RTKKIFVGGL PPILTEDDFK DFFEKYGAVV EHQIMRDHQT RRSRGFGFVV FESEEVVDDL LANGNMIDLA GSKVEIKKAE PKKSSNLPTS
201: TGSDSRSAYG RDCRDRPSGD DRGGLADAYS SYNSGGFGPY RNHGGFVGGY GGVRDYHERY GHYYPELGGY EGMSSFGYPS RFGPYGGGLD GPYAAGNLRG
301: YRRGGDESFG GPGSSSFGGA MYAGAYDPAL GIYAPGCTPD MNRGSFAPGR HHPY
101: DYMKSNPKDF RTKKIFVGGL PPILTEDDFK DFFEKYGAVV EHQIMRDHQT RRSRGFGFVV FESEEVVDDL LANGNMIDLA GSKVEIKKAE PKKSSNLPTS
201: TGSDSRSAYG RDCRDRPSGD DRGGLADAYS SYNSGGFGPY RNHGGFVGGY GGVRDYHERY GHYYPELGGY EGMSSFGYPS RFGPYGGGLD GPYAAGNLRG
301: YRRGGDESFG GPGSSSFGGA MYAGAYDPAL GIYAPGCTPD MNRGSFAPGR HHPY
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.