Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G281300.1 | Wheat | nucleus | 97.47 | 97.75 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 95.79 | 97.43 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 93.82 | 94.35 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 70.51 | 65.54 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 55.9 | 57.18 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 41.01 | 56.59 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 56.74 | 56.27 |
| OQU81002 | Sorghum | nucleus | 50.84 | 54.03 |
| AT3G13224.2 | Thale cress | nucleus | 53.09 | 52.79 |
| PGSC0003DMT400044868 | Potato | nucleus | 50.28 | 52.34 |
| KRH17717 | Soybean | nucleus | 51.69 | 52.27 |
| Solyc07g045240.2.1 | Tomato | nucleus | 50.28 | 52.19 |
| Bra039380.1-P | Field mustard | nucleus | 52.25 | 51.38 |
| CDY24201 | Canola | nucleus | 52.25 | 51.38 |
| CDY43360 | Canola | nucleus | 52.25 | 51.38 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 30.9 | 47.83 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 48.31 | 46.11 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 43.54 | 37.44 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 39.33 | 37.04 |
| Os08t0492100-02 | Rice | nucleus | 45.22 | 36.93 |
| PGSC0003DMT400044866 | Potato | extracellular | 50.0 | 33.33 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 30.06 | 28.84 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 30.62 | 24.11 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 28.09 | 21.23 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 20.22 | 20.51 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 20.79 | 19.84 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 20.22 | 19.73 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 14.89 | 17.91 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 13.48 | 16.84 |
| TraesCS3B01G250700.1 | Wheat | golgi | 20.22 | 16.36 |
| TraesCS6B01G306600.1 | Wheat | plastid | 12.08 | 15.09 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 12.92 | 14.74 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 12.36 | 14.67 |
| TraesCS6B01G348100.1 | Wheat | plastid | 12.64 | 14.47 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 17.98 | 14.13 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 10.67 | 13.92 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 10.96 | 13.04 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 15.45 | 10.81 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G178300.1 | EnsemblPlantsGene:TraesCS7B01G178300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45276 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7B:-:257650607..257664995
Molecular Weight (calculated)
38440.6 Da
IEP (calculated)
7.933
GRAVY (calculated)
-0.719
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSEARPKG YGGGDVGGSG SPGKIFVGGL PRDTTLATFQ KHFGNYGEIV DSVIMKNKQT SQPRGFGFIT YSDPAIVDKV MEDTHVINGK QVEIKRTIPK
101: DYMQSNPKDF RTKKIFVGGL PPILTEDDFK DFFEKYGAVV EHQIMRDHQT RRSRGFGFVV FESEEVVDDL LANGNMIDLD GSKVEIKKAE PKKSSNLPTS
201: TGSDSRSAYG RDSRDHSSGD DRGGLADAYS SYNSGGFGPY RNHGGFVGGH GGVRDYHERY SHYYPGLGGY EGMSSSFGYP SRFGPYGGGF DGPYGGGNLR
301: GYRRGGDESF SGPGSSSFGG AMYAGAYDPA LGVYAPGGTP DMMNRGSFAP GRYHPY
101: DYMQSNPKDF RTKKIFVGGL PPILTEDDFK DFFEKYGAVV EHQIMRDHQT RRSRGFGFVV FESEEVVDDL LANGNMIDLD GSKVEIKKAE PKKSSNLPTS
201: TGSDSRSAYG RDSRDHSSGD DRGGLADAYS SYNSGGFGPY RNHGGFVGGH GGVRDYHERY SHYYPGLGGY EGMSSSFGYP SRFGPYGGGF DGPYGGGNLR
301: GYRRGGDESF SGPGSSSFGG AMYAGAYDPA LGVYAPGGTP DMMNRGSFAP GRYHPY
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.