Factsheet for TraesCS5B01G410100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G415400.1	Wheat	nucleus	96.3	97.69
TraesCS5A01G405300.1	Wheat	nucleus	80.06	78.27
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	75.5	73.2
GSMUA_Achr4P32300_001	Banana	nucleus	11.97	28.57
GSMUA_Achr4P28100_001	Banana	nucleus	31.34	24.89
GSMUA_Achr7P00730_001	Banana	cytosol	11.68	22.65
TraesCS1B01G168200.1	Wheat	nucleus	28.49	22.12
TraesCS7B01G178300.1	Wheat	nucleus	20.51	20.22
TraesCS2B01G216600.2	Wheat	cytosol	25.64	19.11
TraesCS7B01G266900.1	Wheat	nucleus	19.66	18.25
TraesCS6B01G321300.2	Wheat	nucleus	19.09	17.96
TraesCS1B01G249300.1	Wheat	cytosol	17.95	17.26
TraesCS6B01G217500.1	Wheat	nucleus	19.66	16.67
TraesCS3B01G532600.3	Wheat	cytosol	17.66	16.62
TraesCS3B01G419200.1	Wheat	nucleus	11.68	13.85
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	10.26	12.63
TraesCS6B01G348100.1	Wheat	plastid	11.11	12.54
TraesCS4B01G225300.1	Wheat	nucleus	9.69	12.45
TraesCS6B01G306600.1	Wheat	plastid	9.97	12.28
TraesCS3B01G250700.1	Wheat	golgi	15.1	12.05
TraesCS7B01G084600.1	Wheat	nucleus	9.69	11.33
TraesCS3B01G211700.1	Wheat	nucleus	14.24	11.04
TraesCS2B01G556700.1	Wheat	nucleus	15.67	10.81
TraesCS3B01G562300.3	Wheat	mitochondrion	9.12	10.26
TraesCS4B01G197500.2	Wheat	cytosol, mitochondrion, nucleus	8.26	9.7
CDX69277	Canola	mitochondrion	3.13	5.91

Protein Annotations

EnsemblPlants:TraesCS5B01G410100.1	EnsemblPlantsGene:TraesCS5B01G410100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44291
PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1	:

Description

No Description!

Coordinates

chr5B:+:585044488..585047337

Molecular Weight (calculated)

39956.8 Da

IEP (calculated)

6.743

GRAVY (calculated)

-0.726

Length

351 amino acids

Sequence
(BLAST)

001: MALETRKLYV GGLPPSAQQE ELQEHFSRYG EVLRVRVVRD WETGQCRGFA FVEFADDEGP RAALQEKEKD NHVFGDRTVD VKRARTRPMR YQNEQSFYQY
101: ALNQSPIQSP IQSPVHNQWY TQSSSNNSYA GNGHRTCDPN KVFVGGLRGN VTKEHLQSYF EKFGRITDVV VIREGASQRS RGFGFITFDS EEAMVNVLES
201: KFHDLNGTKV ETKRAIPKGH SYYQDRLQYN PMIWNGNNPP IGFAGAYPPH MQHIVNNHYV MPMPQYMCLP EYVYMMNGGV PLTRQGSLNT GYGTQIGYGY
301: DHVNTNRFGA QLGEAKSDNK LIEDITEQQV DLPATRQETL GMDDQATVTT L

Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.