Factsheet for TraesCS5D01G415400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G410100.1	Wheat	nucleus	97.69	96.3
TraesCS5A01G405300.1	Wheat	nucleus	82.08	79.11
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	76.88	73.48
TraesCS2D01G256500.1	Wheat	nucleus	39.88	36.9
GSMUA_Achr4P32300_001	Banana	nucleus	12.14	28.57
GSMUA_Achr4P28100_001	Banana	nucleus	32.08	25.11
GSMUA_Achr7P00730_001	Banana	cytosol	11.85	22.65
TraesCS1D01G147600.1	Wheat	nucleus	28.9	22.03
TraesCS7D01G281300.1	Wheat	nucleus	21.68	21.13
TraesCS6D01G272500.1	Wheat	nucleus	20.23	20.17
TraesCS4D01G152200.1	Wheat	nucleus	26.3	19.65
TraesCS2D01G197500.2	Wheat	nucleus	26.3	19.36
TraesCS1D01G237800.3	Wheat	cytosol	18.5	17.58
TraesCS6D01G173900.1	Wheat	nucleus	20.52	17.36
TraesCS7D01G362200.1	Wheat	nucleus	21.68	16.89
TraesCS3D01G480300.1	Wheat	cytosol	17.92	16.62
TraesCS3D01G380100.1	Wheat	nucleus	11.85	13.85
TraesCS4D01G225900.1	Wheat	nucleus	9.54	13.25
TraesCS6D01G258900.4	Wheat	plastid	10.69	12.85
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	10.4	12.54
TraesCS6D01G297300.1	Wheat	plastid	10.98	12.18
TraesCS3D01G232300.1	Wheat	nucleus	15.03	11.82
TraesCS7D01G180800.1	Wheat	nucleus	9.83	11.3
TraesCS3D01G186500.1	Wheat	nucleus	15.61	11.25
TraesCS2D01G529100.1	Wheat	nucleus	15.61	10.61
TraesCS3D01G505900.1	Wheat	mitochondrion	8.96	9.81
TraesCS4D01G198000.3	Wheat	cytosol	8.09	8.78
CDX69277	Canola	mitochondrion	3.47	6.45

Protein Annotations

EnsemblPlants:TraesCS5D01G415400.1	EnsemblPlantsGene:TraesCS5D01G415400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44212
PANTHER:PTHR44212:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:477829520..477832306

Molecular Weight (calculated)

39380.2 Da

IEP (calculated)

6.914

GRAVY (calculated)

-0.722

Length

346 amino acids

Sequence
(BLAST)

001: MALETRKLYV GGLPPSAQQE ELQEHFGRYG EVLRVRVVRD WETGQCRGFA FVEFADDEGP RAALQEKEKA NHVFGDRTVD VKRARTRPMR YQNEQSFYQY
101: ALNQSPIQSP VHNQWYTQSS SNNSYAGNGH RSCDPNKVFV GGLRGNVTKE HLQSYFEKFG RITDVVVIRE GASQRSRGFG FITFDSEEAM VNVLESKFHD
201: LNGTKVETKR AIPKGHSYYQ DTRQYNPMIW DGNNPPIGFA GAYPPHMQHI VNNHYVMPMP QYMCLPEYVY MMNGGVPLTR QGSLYTGYGT IGYGYDHVNT
301: NRFGAQLGEA KSDNKLIEDI KEQQVDLPAT RQETLGMDDQ ATVTTL

Best Arabidopsis Sequence Match ( AT4G26650.2 )
(BLAST)

001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA

Arabidopsis Description

AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.