Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G068100.1 | Wheat | nucleus | 96.39 | 96.39 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 93.98 | 85.71 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 92.77 | 84.31 |
| AT5G53720.1 | Thale cress | cytosol | 18.47 | 46.0 |
| CDY51790 | Canola | cytosol | 18.88 | 43.93 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.92 | 43.5 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.88 | 41.96 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 26.51 | 41.51 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 34.14 | 35.27 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 40.56 | 34.12 |
| KRH64318 | Soybean | nucleus | 34.94 | 33.85 |
| KRH53608 | Soybean | nucleus | 33.33 | 33.74 |
| PGSC0003DMT400025900 | Potato | nucleus | 37.35 | 32.4 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.73 | 31.82 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.12 | 31.78 |
| AT5G53680.1 | Thale cress | cytosol | 20.88 | 30.77 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 34.54 | 29.97 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.88 | 29.71 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 37.35 | 29.43 |
| TraesCS6D01G258900.4 | Wheat | plastid | 33.33 | 28.82 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 34.94 | 27.27 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 32.13 | 26.58 |
| TraesCS6D01G297300.1 | Wheat | plastid | 30.52 | 24.36 |
| Bra029612.1-P | Field mustard | nucleus | 20.88 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 21.69 | 17.03 |
| CDY24657 | Canola | nucleus | 22.09 | 16.18 |
| CDY05301 | Canola | nucleus | 22.09 | 15.67 |
| CDX74070 | Canola | cytosol | 21.69 | 15.0 |
| CDY08023 | Canola | nucleus | 21.69 | 15.0 |
| Bra001228.1-P | Field mustard | cytosol | 20.48 | 14.09 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 19.28 | 13.83 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 22.89 | 12.95 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 20.88 | 12.71 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 22.09 | 12.39 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 18.07 | 12.03 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 21.29 | 11.67 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 21.69 | 11.66 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 21.29 | 11.28 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 16.47 | 11.26 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 16.47 | 10.99 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 15.26 | 10.7 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 18.47 | 9.58 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 13.25 | 9.54 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 18.88 | 9.23 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G225900.1 | EnsemblPlantsGene:TraesCS4D01G225900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:384971766..384974684
Molecular Weight (calculated)
26810.8 Da
IEP (calculated)
6.887
GRAVY (calculated)
-0.552
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDTTFTKL FVGGLAWQTQ RDAMRRYFEQ FGDIAEAVVI ADKHTGRSRG YGFVTFRDPE AAARALQDPT PVIDGRRANC NLAALGASQR AHPAAAAPFG
101: MVRSTPPATS SSSYQGSAAA AVAASYFPQQ AHYTYPYYYG YTGGYSHENM YQMQMSYYGA QGGRVAQQQQ QQQSQVQTYY TAAGPEGAQQ GFSPYYLQQM
201: QAASNQGQSS SAAVMQYSQM MQYAAHMQQA AHAAGLHGAD APESAGDSG
101: MVRSTPPATS SSSYQGSAAA AVAASYFPQQ AHYTYPYYYG YTGGYSHENM YQMQMSYYGA QGGRVAQQQQ QQQSQVQTYY TAAGPEGAQQ GFSPYYLQQM
201: QAASNQGQSS SAAVMQYSQM MQYAAHMQQA AHAAGLHGAD APESAGDSG
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.