Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G348100.1 | Wheat | plastid | 94.87 | 95.18 |
| HORVU6Hr1G078060.1 | Barley | plastid | 94.23 | 93.04 |
| Os02t0755400-01 | Rice | plastid | 40.38 | 71.59 |
| Zm00001d052212_P001 | Maize | nucleus | 32.37 | 62.73 |
| KXG30724 | Sorghum | plastid | 62.18 | 62.58 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 96.47 | 61.81 |
| Zm00001d018103_P002 | Maize | plasma membrane | 61.54 | 60.38 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.24 | 53.46 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 29.49 | 51.98 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 38.78 | 51.27 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 44.55 | 46.18 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 38.78 | 45.83 |
| AT5G53720.1 | Thale cress | cytosol | 14.42 | 45.0 |
| CDY51790 | Canola | cytosol | 13.14 | 38.32 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.46 | 37.5 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 28.85 | 37.34 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.97 | 36.93 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 33.65 | 36.59 |
| KRH53608 | Soybean | nucleus | 28.21 | 35.77 |
| TraesCS6D01G258900.4 | Wheat | plastid | 32.05 | 34.72 |
| AT5G53680.1 | Thale cress | cytosol | 18.27 | 33.73 |
| KRH64318 | Soybean | nucleus | 27.56 | 33.46 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 17.31 | 30.86 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 24.36 | 30.52 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 27.56 | 29.05 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 27.24 | 26.9 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 27.24 | 26.65 |
| Bra029612.1-P | Field mustard | nucleus | 15.71 | 17.07 |
| AT3G06970.1 | Thale cress | nucleus | 16.03 | 15.77 |
| CDY05301 | Canola | nucleus | 16.67 | 14.81 |
| CDY24657 | Canola | nucleus | 16.03 | 14.71 |
| CDY08023 | Canola | nucleus | 16.35 | 14.17 |
| Bra001228.1-P | Field mustard | cytosol | 15.71 | 13.54 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 18.91 | 13.41 |
| CDX74070 | Canola | cytosol | 15.38 | 13.33 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 14.74 | 12.96 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 14.1 | 12.68 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 14.42 | 12.36 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 16.03 | 12.22 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 14.42 | 12.03 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 13.78 | 11.53 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 16.35 | 11.49 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 12.18 | 10.98 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 16.67 | 10.83 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 16.03 | 10.8 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 14.74 | 10.13 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 16.35 | 10.02 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 15.06 | 10.0 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G297300.1 | EnsemblPlantsGene:TraesCS6D01G297300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12384 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:408215470..408222471
Molecular Weight (calculated)
33663.5 Da
IEP (calculated)
6.892
GRAVY (calculated)
-0.924
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAAASSS SPAGGASSPT QAPGGGGGGG GGGVPYHRSR FGDTTLTKVF VGGLAWETPS AGLHDHFREY GEILEAVVIT DRETGRSKGY GFVTFRDPES
101: AQQAVQNPNP MIAGRRANCN IASMGPPRPS PQRGRAPRGP DQQHSGPEPY MGGRMHHQQQ QMPTPPHAMF YNPSPYGYWY PPDYQYQQAF YNQMQQNYSQ
201: QYGQTSPSTS PYPYMGYMTS GQNPRAGFSP LQQQAARPPF FQQPAEGSFQ AAPSLPPNFR LQLPPRAISR QSDDVSGSQP TQTVPEAEAT NTDNQEASAP
301: VERSNSEENT SN
101: AQQAVQNPNP MIAGRRANCN IASMGPPRPS PQRGRAPRGP DQQHSGPEPY MGGRMHHQQQ QMPTPPHAMF YNPSPYGYWY PPDYQYQQAF YNQMQQNYSQ
201: QYGQTSPSTS PYPYMGYMTS GQNPRAGFSP LQQQAARPPF FQQPAEGSFQ AAPSLPPNFR LQLPPRAISR QSDDVSGSQP TQTVPEAEAT NTDNQEASAP
301: VERSNSEENT SN
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.