Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G297300.1 | Wheat | plastid | 61.81 | 96.47 |
| TraesCS6B01G348100.1 | Wheat | plastid | 60.78 | 95.18 |
| HORVU6Hr1G078060.1 | Barley | plastid | 61.4 | 94.62 |
| Os02t0755400-01 | Rice | plastid | 26.28 | 72.73 |
| Zm00001d052212_P001 | Maize | nucleus | 20.94 | 63.35 |
| KXG30724 | Sorghum | plastid | 40.04 | 62.9 |
| Zm00001d018103_P002 | Maize | plasma membrane | 39.84 | 61.01 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 17.04 | 52.2 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 18.69 | 51.41 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 24.44 | 50.42 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 28.95 | 46.38 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 24.44 | 45.08 |
| AT5G53720.1 | Thale cress | cytosol | 9.03 | 44.0 |
| CDY51790 | Canola | cytosol | 8.21 | 37.38 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 18.48 | 37.34 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 21.56 | 37.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.42 | 36.61 |
| PGSC0003DMT400025900 | Potato | nucleus | 21.36 | 36.24 |
| KRH53608 | Soybean | nucleus | 17.66 | 34.96 |
| TraesCS6A01G278300.3 | Wheat | plastid | 20.74 | 34.59 |
| KRH64318 | Soybean | nucleus | 17.25 | 32.68 |
| AT5G53680.1 | Thale cress | cytosol | 11.29 | 32.54 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 10.88 | 30.29 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 15.4 | 30.12 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 18.07 | 29.63 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 17.25 | 27.91 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 17.66 | 27.56 |
| Bra029612.1-P | Field mustard | nucleus | 10.06 | 17.07 |
| AT3G06970.1 | Thale cress | nucleus | 10.06 | 15.46 |
| CDY05301 | Canola | nucleus | 10.68 | 14.81 |
| CDY24657 | Canola | nucleus | 10.27 | 14.71 |
| CDY08023 | Canola | nucleus | 10.06 | 13.61 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 12.12 | 13.41 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 9.45 | 13.14 |
| Bra001228.1-P | Field mustard | cytosol | 9.65 | 12.98 |
| CDX74070 | Canola | cytosol | 9.45 | 12.78 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 10.47 | 12.72 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 9.45 | 12.37 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 8.62 | 12.32 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 10.27 | 12.11 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 9.03 | 12.05 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 10.88 | 11.04 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 10.47 | 11.02 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 8.42 | 10.99 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 7.8 | 10.59 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 9.86 | 10.57 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 10.27 | 9.82 |
| TraesCS2A01G190400.1 | Wheat | plastid | 10.27 | 9.42 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G318100.1 | EnsemblPlantsGene:TraesCS6A01G318100 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12384 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:554304944..554310324
Molecular Weight (calculated)
52989.0 Da
IEP (calculated)
7.303
GRAVY (calculated)
-0.909
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYKQEGGVE GSYYSYPLET RARKGHAAVI PPRSPLVQRT AAPSPSPSCR HTDIVSSPVS SLPRQREEGE ACYGSASFHP EREERSISGD RRREVSVQGR
101: EPEPDRTKPS RPKALLTAYQ SGKVSLRVQG SSAIDSSFHP GFTWRLPSRP KQQGREEEED FACAVPRGCV LELEEEMAAT AAASSSSPAG GASSPAQAPG
201: GGGGGGGGGG GVPYHRSRFG DTTLTKVFVG GLAWETPSAG LHDHFREYGE ILEAVVITDR ETGRSKGYGF VTFRDPEAAQ QAVQNPNPMI AGRRANCNIA
301: SMGPPRPSPQ RGRAPRGPDQ QHSGPQPYMG GRMQQQMPTP PHAMFYNPSP YGYWYPPDYQ YQQAFYNQMQ QYYSQQYGQT SPSTSPYPYM GYMTSGQNPR
401: AGFSPLQHQA ARPPFFQQQS EGSFQAAPSL PPNFRLQLPP RAISRQSDDV SGSQPTQTVS EAEATNTDNQ EASAPVERSN SEENTSN
101: EPEPDRTKPS RPKALLTAYQ SGKVSLRVQG SSAIDSSFHP GFTWRLPSRP KQQGREEEED FACAVPRGCV LELEEEMAAT AAASSSSPAG GASSPAQAPG
201: GGGGGGGGGG GVPYHRSRFG DTTLTKVFVG GLAWETPSAG LHDHFREYGE ILEAVVITDR ETGRSKGYGF VTFRDPEAAQ QAVQNPNPMI AGRRANCNIA
301: SMGPPRPSPQ RGRAPRGPDQ QHSGPQPYMG GRMQQQMPTP PHAMFYNPSP YGYWYPPDYQ YQQAFYNQMQ QYYSQQYGQT SPSTSPYPYM GYMTSGQNPR
401: AGFSPLQHQA ARPPFFQQQS EGSFQAAPSL PPNFRLQLPP RAISRQSDDV SGSQPTQTVS EAEATNTDNQ EASAPVERSN SEENTSN
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.