Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G480300.1 | Wheat | cytosol | 96.51 | 96.51 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 94.1 | 94.1 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 89.28 | 89.76 |
| KXG34100 | Sorghum | cytosol | 70.78 | 73.33 |
| Zm00001d011885_P008 | Maize | cytosol | 69.44 | 71.94 |
| Os01t0945800-01 | Rice | nucleus | 69.71 | 71.63 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 62.47 | 63.84 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 57.91 | 60.17 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 57.64 | 59.89 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 52.01 | 58.97 |
| PGSC0003DMT400010280 | Potato | cytosol | 56.3 | 56.6 |
| KRH28467 | Soybean | cytosol | 55.23 | 56.44 |
| KRH77004 | Soybean | nucleus | 54.69 | 56.35 |
| Solyc02g090910.2.1 | Tomato | nucleus | 56.57 | 56.12 |
| CDY42724 | Canola | cytosol | 54.42 | 53.56 |
| AT4G36960.2 | Thale cress | cytosol | 54.42 | 53.56 |
| Zm00001d042133_P003 | Maize | cytosol | 56.84 | 53.27 |
| CDY69852 | Canola | cytosol | 54.42 | 53.14 |
| Bra017802.1-P | Field mustard | nucleus | 53.62 | 49.02 |
| CDX69279 | Canola | nucleus | 20.64 | 32.63 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 24.93 | 23.19 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 24.66 | 22.28 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 19.84 | 21.14 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 18.5 | 20.23 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 19.84 | 19.89 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 24.4 | 19.65 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 23.06 | 18.94 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 17.69 | 18.38 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 12.6 | 16.61 |
| TraesCS2A01G190400.1 | Wheat | plastid | 23.59 | 16.57 |
| TraesCS6A01G278300.3 | Wheat | plastid | 12.87 | 16.44 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 12.87 | 15.38 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 17.96 | 15.23 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 12.06 | 15.15 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 9.92 | 14.86 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 12.06 | 14.8 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 17.69 | 13.75 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 10.46 | 12.96 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 17.16 | 12.57 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 10.99 | 8.42 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G485000.1 | EnsemblPlantsGene:TraesCS3A01G485000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45519 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3A:-:714424755..714430123
Molecular Weight (calculated)
40816.1 Da
IEP (calculated)
7.449
GRAVY (calculated)
-0.558
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLVVFGL PWDVDSEGLR KHMAKFGPLE DCIVMKDRFS GRSRGFGYIT FSSADDVKNV LECEHFLGNR PLEVKIAIPR EELKAQPPGT KTATRIFVGR
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFQRAESVDS IMQESHELDG TTLHVDRATP KHQDEDIRHP PSRTSQDGGD YGLGYGAYDV
201: YIAAATMFGA LGPPTRYDHP GSAYGRGYSG SPPETGKKIF VGGIPQEANK DDLRNYFGGF GRVANVFIPR DPKGSGHRTF GFVTFSDEGV ADKVADKSHE
301: ILGCKVTVDI AAPPRGDSSG RFADPMPGVD LHAPPYGSMR PFGMFCGNLG YDRGYGPGGG GSRSRTDGRH RPY
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFQRAESVDS IMQESHELDG TTLHVDRATP KHQDEDIRHP PSRTSQDGGD YGLGYGAYDV
201: YIAAATMFGA LGPPTRYDHP GSAYGRGYSG SPPETGKKIF VGGIPQEANK DDLRNYFGGF GRVANVFIPR DPKGSGHRTF GFVTFSDEGV ADKVADKSHE
301: ILGCKVTVDI AAPPRGDSSG RFADPMPGVD LHAPPYGSMR PFGMFCGNLG YDRGYGPGGG GSRSRTDGRH RPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.