Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34100 | Sorghum | cytosol | 74.37 | 82.22 |
| Zm00001d011885_P008 | Maize | cytosol | 73.87 | 81.67 |
| Os01t0945800-01 | Rice | nucleus | 68.34 | 74.93 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 54.02 | 59.89 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 48.49 | 58.66 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 54.02 | 57.64 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 53.52 | 57.1 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 51.51 | 57.1 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 53.27 | 56.84 |
| PGSC0003DMT400010280 | Potato | cytosol | 52.26 | 56.06 |
| Solyc02g090910.2.1 | Tomato | nucleus | 52.51 | 55.59 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 51.51 | 55.26 |
| KRH77004 | Soybean | nucleus | 50.25 | 55.25 |
| KRH28467 | Soybean | cytosol | 50.25 | 54.79 |
| CDY42724 | Canola | cytosol | 50.25 | 52.77 |
| CDY69852 | Canola | cytosol | 50.25 | 52.36 |
| AT4G36960.2 | Thale cress | cytosol | 49.5 | 51.98 |
| Bra017802.1-P | Field mustard | nucleus | 49.5 | 48.28 |
| CDX69279 | Canola | nucleus | 11.56 | 19.49 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 20.1 | 19.37 |
| Zm00001d016349_P002 | Maize | nucleus | 18.59 | 19.27 |
| Zm00001d046190_P001 | Maize | extracellular | 19.85 | 18.9 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.83 | 18.1 |
| Zm00001d019079_P001 | Maize | cytosol | 19.35 | 17.19 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 16.33 | 16.97 |
| Zm00001d034200_P001 | Maize | nucleus | 7.04 | 16.37 |
| Zm00001d007772_P001 | Maize | nucleus | 18.34 | 16.26 |
| Zm00001d007839_P001 | Maize | cytosol | 15.08 | 16.22 |
| Zm00001d032739_P001 | Maize | nucleus | 17.59 | 15.8 |
| Zm00001d019084_P002 | Maize | nucleus | 17.84 | 15.64 |
| Zm00001d006704_P002 | Maize | nucleus | 18.59 | 15.29 |
| Zm00001d034201_P001 | Maize | nucleus | 9.55 | 15.14 |
| Zm00001d014058_P002 | Maize | plastid | 18.09 | 14.94 |
| Zm00001d018730_P001 | Maize | nucleus | 13.57 | 14.44 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 18.59 | 13.68 |
| Zm00001d019086_P001 | Maize | nucleus | 17.84 | 13.35 |
| Zm00001d053572_P002 | Maize | cytosol | 17.59 | 12.75 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 8.79 | 12.54 |
| Zm00001d052212_P001 | Maize | nucleus | 5.03 | 12.42 |
| Zm00001d042641_P001 | Maize | nucleus | 8.79 | 11.86 |
| Zm00001d042042_P001 | Maize | nucleus | 9.8 | 11.47 |
| Zm00001d044469_P003 | Maize | nucleus | 12.81 | 11.41 |
| Zm00001d011336_P002 | Maize | nucleus | 12.56 | 11.16 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 12.06 | 10.57 |
| Zm00001d002141_P006 | Maize | nucleus | 13.82 | 10.56 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 7.54 | 10.1 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 8.54 | 10.0 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 13.07 | 9.98 |
| Zm00001d046716_P001 | Maize | nucleus | 8.79 | 9.72 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 6.78 | 9.68 |
| Zm00001d018103_P002 | Maize | plasma membrane | 7.54 | 9.43 |
| Zm00001d037209_P001 | Maize | plastid | 7.79 | 9.34 |
| Zm00001d017829_P002 | Maize | plastid | 7.54 | 8.7 |
| Zm00001d051627_P002 | Maize | plastid | 7.29 | 7.88 |
Protein Annotations
| EntrezGene:100285224 | Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A1D6N1K8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM34609.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45519 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000844FFBD | EnsemblPlantsGene:Zm00001d042133 | EnsemblPlants:Zm00001d042133_P003 | EnsemblPlants:Zm00001d042133_T003 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr3:+:152709850..152715263
Molecular Weight (calculated)
44810.4 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.324
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLVVLGI PWDVDTEGLR EYMAKFGPLD DCVVMKNVLD CEHVLGSRTL EVKIATPKEE MKSQGTKKAT RIFVARIPQS VDESMFRRHF EAFGEILDLY
101: MPKVRKIKTW FAWNTASGFL QLVIVLFHNV HNAAMLFDLF DVMILDYKGE HHNEASQADI NGYVALHVWG KLEVDMTMIL LKFALHTHRN MVQRGIVELG
201: LSRFRVQEED VRYPPSRPSQ GGYGAYNAYI SAATRYATLG APTLYDHPGS AYGRGYYGSS QAVGKKIFVG RLPQEANTDD LRHYFGRFGR IVDAYIPKDP
301: KRSGHRGFGF VTFADEGVAE RVSRRSHEIL GHEVAIDTAA PLENDSAGGG YIDPMDLYGA YGSMRSFGRF CGGLDYNYGY GPSSGSSRSR SDWRYRPY
101: MPKVRKIKTW FAWNTASGFL QLVIVLFHNV HNAAMLFDLF DVMILDYKGE HHNEASQADI NGYVALHVWG KLEVDMTMIL LKFALHTHRN MVQRGIVELG
201: LSRFRVQEED VRYPPSRPSQ GGYGAYNAYI SAATRYATLG APTLYDHPGS AYGRGYYGSS QAVGKKIFVG RLPQEANTDD LRHYFGRFGR IVDAYIPKDP
301: KRSGHRGFGF VTFADEGVAE RVSRRSHEIL GHEVAIDTAA PLENDSAGGG YIDPMDLYGA YGSMRSFGRF CGGLDYNYGY GPSSGSSRSR SDWRYRPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.