Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85520 | Sorghum | nucleus, plastid | 66.3 | 82.71 |
| Zm00001d017829_P002 | Maize | plastid | 77.45 | 82.61 |
| Os02t0714000-01 | Rice | nucleus, plastid | 57.61 | 73.87 |
| TraesCS6B01G306600.1 | Wheat | plastid | 56.25 | 72.63 |
| TraesCS6D01G258900.4 | Wheat | plastid | 56.79 | 72.57 |
| HORVU6Hr1G070150.1 | Barley | plastid | 32.88 | 72.46 |
| TraesCS6A01G278300.3 | Wheat | plastid | 56.52 | 71.23 |
| HORVU6Hr1G070140.3 | Barley | plastid | 29.08 | 68.59 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 56.52 | 62.65 |
| AT5G53720.1 | Thale cress | cytosol | 13.04 | 48.0 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 22.55 | 46.89 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 20.11 | 46.54 |
| CDY51790 | Canola | cytosol | 13.32 | 45.79 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 29.89 | 45.64 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.86 | 45.54 |
| PGSC0003DMT400025900 | Potato | nucleus | 34.78 | 44.6 |
| Zm00001d052212_P001 | Maize | nucleus | 19.29 | 44.1 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 29.35 | 38.71 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 23.64 | 36.86 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 24.18 | 33.71 |
| Zm00001d042641_P001 | Maize | nucleus | 26.63 | 33.22 |
| KRH53608 | Soybean | nucleus | 22.01 | 32.93 |
| KRH64318 | Soybean | nucleus | 22.83 | 32.68 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 15.49 | 32.57 |
| AT5G53680.1 | Thale cress | cytosol | 14.95 | 32.54 |
| Zm00001d046716_P001 | Maize | nucleus | 30.43 | 31.11 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 23.1 | 30.47 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 26.63 | 28.82 |
| Zm00001d037209_P001 | Maize | plastid | 25.82 | 28.61 |
| Zm00001d042042_P001 | Maize | nucleus | 26.09 | 28.24 |
| Zm00001d018103_P002 | Maize | plasma membrane | 24.18 | 27.99 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 22.55 | 27.95 |
| Bra029612.1-P | Field mustard | nucleus | 13.86 | 17.77 |
| AT3G06970.1 | Thale cress | nucleus | 14.4 | 16.72 |
| CDY08023 | Canola | nucleus | 15.49 | 15.83 |
| CDX74070 | Canola | cytosol | 15.49 | 15.83 |
| CDY24657 | Canola | nucleus | 14.4 | 15.59 |
| CDY05301 | Canola | nucleus | 14.67 | 15.38 |
| Bra001228.1-P | Field mustard | cytosol | 14.95 | 15.19 |
| Zm00001d016349_P002 | Maize | nucleus | 14.4 | 13.8 |
| Zm00001d044469_P003 | Maize | nucleus | 16.3 | 13.42 |
| Zm00001d011336_P002 | Maize | nucleus | 15.76 | 12.95 |
| Zm00001d030579_P001 | Maize | mitochondrion | 11.68 | 12.36 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 13.86 | 12.35 |
| Zm00001d046190_P001 | Maize | extracellular | 13.86 | 12.2 |
| Zm00001d018730_P001 | Maize | nucleus | 11.68 | 11.5 |
| Zm00001d011885_P008 | Maize | cytosol | 11.14 | 11.39 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 11.68 | 11.23 |
| Zm00001d019079_P001 | Maize | cytosol | 13.59 | 11.16 |
| Zm00001d034200_P001 | Maize | nucleus | 5.16 | 11.11 |
| Zm00001d007772_P001 | Maize | nucleus | 13.32 | 10.91 |
| Zm00001d007839_P001 | Maize | cytosol | 10.87 | 10.81 |
| Zm00001d034201_P001 | Maize | nucleus | 7.34 | 10.76 |
| Zm00001d032739_P001 | Maize | nucleus | 12.77 | 10.61 |
| Zm00001d006704_P002 | Maize | nucleus | 13.86 | 10.54 |
| Zm00001d002141_P006 | Maize | nucleus | 14.67 | 10.36 |
| Zm00001d019084_P002 | Maize | nucleus | 12.77 | 10.35 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 14.4 | 10.17 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 12.5 | 10.13 |
| Zm00001d014058_P002 | Maize | plastid | 13.04 | 9.96 |
| Zm00001d019086_P001 | Maize | nucleus | 14.13 | 9.77 |
| Zm00001d053572_P002 | Maize | cytosol | 14.4 | 9.65 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 14.13 | 9.61 |
| Zm00001d042133_P003 | Maize | cytosol | 7.88 | 7.29 |
Protein Annotations
| EntrezGene:100501435 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6Q8I5 | ProteinID:AQK54716.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0008431A92 | EnsemblPlantsGene:Zm00001d051627 | EnsemblPlants:Zm00001d051627_P002 | EnsemblPlants:Zm00001d051627_T002 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr4:+:165049566..165054444
Molecular Weight (calculated)
39942.1 Da
IEP (calculated)
9.184
GRAVY (calculated)
-0.249
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQQQHAGP ASGSASASSS SSGLHLPASP SAFGDTTHTK VFVGGLAWET NSGRLRRFYE RFGDILEAVV ITDRHSGRSK GYGFVTFREA ESARKACEDP
101: TPVIDGRRAN CNLASLGRAQ HPVHPGRPSS AGSYFGVPVP RAFYLGGYGH HRPFPLGYYQ GFPVPQYSYP SYGTEYISPQ GTLNPYPAQQ YLPIYGVSAA
201: ANTANQTFNQ LNPYISGGGN GYMSVHSYNM PGNQYVQLTG SNFSSASPTA QPSCQTPFLV ESWKLFKVPL DCSRTKKSSV AVSTAFVLAW QEIILAFIRL
301: SLSWSTDVPG NREVVPMDGA SDPRARVALA FPLGLNRIRV MEPDAALMIL YLTSSWKCSL CWNGVQHM
101: TPVIDGRRAN CNLASLGRAQ HPVHPGRPSS AGSYFGVPVP RAFYLGGYGH HRPFPLGYYQ GFPVPQYSYP SYGTEYISPQ GTLNPYPAQQ YLPIYGVSAA
201: ANTANQTFNQ LNPYISGGGN GYMSVHSYNM PGNQYVQLTG SNFSSASPTA QPSCQTPFLV ESWKLFKVPL DCSRTKKSSV AVSTAFVLAW QEIILAFIRL
301: SLSWSTDVPG NREVVPMDGA SDPRARVALA FPLGLNRIRV MEPDAALMIL YLTSSWKCSL CWNGVQHM
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.