Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010282_P001 | |
| Zm00001d038190_P012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | Zm00001d010282_P001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | Zm00001d038190_P012 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02078 | Sorghum | nucleus | 82.65 | 83.14 |
| Os01t0958500-01 | Rice | nucleus | 64.12 | 70.32 |
| KRH75298 | Soybean | cytosol, nucleus | 20.0 | 68.69 |
| KRH13261 | Soybean | cytosol | 23.53 | 64.52 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 56.18 | 61.22 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 54.71 | 59.62 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 54.71 | 59.42 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 55.0 | 59.18 |
| KRH40033 | Soybean | nucleus | 38.53 | 48.16 |
| KRH23771 | Soybean | nucleus | 38.24 | 47.79 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 36.47 | 47.51 |
| PGSC0003DMT400008944 | Potato | nucleus | 36.76 | 47.35 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 37.06 | 46.84 |
| GSMUA_Achr10P... | Banana | nucleus | 37.06 | 46.49 |
| Zm00001d052212_P001 | Maize | nucleus | 21.76 | 45.96 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 34.71 | 45.56 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 36.18 | 45.56 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 34.41 | 44.66 |
| AT1G33470.1 | Thale cress | cytosol | 31.47 | 43.67 |
| CDX73279 | Canola | cytosol | 30.59 | 42.98 |
| CDY69197 | Canola | nucleus | 27.65 | 41.78 |
| Zm00001d042641_P001 | Maize | nucleus | 36.18 | 41.69 |
| CDY04769 | Canola | nucleus | 28.53 | 40.93 |
| Bra024547.1-P | Field mustard | nucleus | 28.53 | 40.59 |
| Bra012350.1-P | Field mustard | nucleus | 29.71 | 40.56 |
| CDY25759 | Canola | nucleus | 29.41 | 40.16 |
| KRH62942 | Soybean | mitochondrion | 23.82 | 39.71 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 30.88 | 37.63 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 35.29 | 35.29 |
| Bra010203.1-P | Field mustard | nucleus | 30.88 | 34.43 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 27.65 | 33.69 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 27.94 | 31.99 |
| CDY67263 | Canola | nucleus | 30.0 | 31.1 |
| Zm00001d046716_P001 | Maize | nucleus | 31.47 | 29.72 |
| Zm00001d037209_P001 | Maize | plastid | 28.82 | 29.52 |
| AT1G22910.3 | Thale cress | nucleus | 29.71 | 29.11 |
| Zm00001d018103_P002 | Maize | plasma membrane | 25.88 | 27.67 |
| Zm00001d017829_P002 | Maize | plastid | 27.65 | 27.25 |
| Zm00001d051627_P002 | Maize | plastid | 28.24 | 26.09 |
| CDY13339 | Canola | mitochondrion | 11.76 | 23.81 |
| CDY21399 | Canola | mitochondrion | 8.24 | 19.31 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 35.0 | 17.84 |
| Zm00001d044469_P003 | Maize | nucleus | 20.0 | 15.21 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.29 | 14.94 |
| Zm00001d016349_P002 | Maize | nucleus | 16.76 | 14.84 |
| Zm00001d046190_P001 | Maize | extracellular | 18.24 | 14.83 |
| Zm00001d011336_P002 | Maize | nucleus | 19.41 | 14.73 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 17.65 | 14.53 |
| Zm00001d011885_P008 | Maize | cytosol | 15.0 | 14.17 |
| Zm00001d034201_P001 | Maize | nucleus | 10.0 | 13.55 |
| Zm00001d034200_P001 | Maize | nucleus | 6.76 | 13.45 |
| Zm00001d032739_P001 | Maize | nucleus | 17.35 | 13.32 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 14.71 | 13.05 |
| Zm00001d007839_P001 | Maize | cytosol | 14.12 | 12.97 |
| Zm00001d019079_P001 | Maize | cytosol | 16.76 | 12.72 |
| Zm00001d007772_P001 | Maize | nucleus | 16.76 | 12.69 |
| Zm00001d014058_P002 | Maize | plastid | 17.35 | 12.24 |
| Zm00001d006704_P002 | Maize | nucleus | 17.35 | 12.19 |
| Zm00001d019084_P002 | Maize | nucleus | 16.18 | 12.11 |
| Zm00001d018730_P001 | Maize | nucleus | 13.24 | 12.03 |
| Zm00001d019086_P001 | Maize | nucleus | 17.65 | 11.28 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 17.94 | 11.28 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 14.12 | 10.57 |
| Zm00001d053572_P002 | Maize | cytosol | 16.76 | 10.38 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.59 | 10.17 |
| Zm00001d002141_P006 | Maize | nucleus | 15.59 | 10.17 |
| Zm00001d042133_P003 | Maize | cytosol | 11.47 | 9.8 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6N0Q4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM34367.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000843606F | EnsemblPlantsGene:Zm00001d042042 | EnsemblPlants:Zm00001d042042_P001 | EnsemblPlants:Zm00001d042042_T001 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr3:-:148431159..148436886
Molecular Weight (calculated)
35001.3 Da
IEP (calculated)
8.744
GRAVY (calculated)
-0.034
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHQATAMMS GGGGAGQFGD TTLTKVFVGG LAWETHKDGM RAYFQQFGDI LEAVVITDKN TGRSKGYGFV TFREPEAALR ACIDPYPVID GRRANCNLAY
101: LGVNKSKRAL TTMLPQYLQP YAAHVYGGGS SMRATMKSFQ TAGGGASLMS FVPAADHGIQ QGIPTYDSVY AAAGYSPYFS DYGYPLSYYQ PYMVGLQQGG
201: QLQQYAAVGG TAAAAPAANP SVGPYSYFQY GPASAAAAGG PYSMVQYPQL YQYAAAVAAG ATAAPTTLAA GVVAGGLQQY GGAVAFTPNS IAQAAGMTMS
301: LTSPALGAAP TTAQQFQYSG RLVPSSPPAA AAADQKPGLA
101: LGVNKSKRAL TTMLPQYLQP YAAHVYGGGS SMRATMKSFQ TAGGGASLMS FVPAADHGIQ QGIPTYDSVY AAAGYSPYFS DYGYPLSYYQ PYMVGLQQGG
201: QLQQYAAVGG TAAAAPAANP SVGPYSYFQY GPASAAAAGG PYSMVQYPQL YQYAAAVAAG ATAAPTTLAA GVVAGGLQQY GGAVAFTPNS IAQAAGMTMS
301: LTSPALGAAP TTAQQFQYSG RLVPSSPPAA AAADQKPGLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.