Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P04410_001 | |
| GSMUA_Achr7P21160_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | GSMUA_Achr1P04410_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_Achr7P21160_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_AchrUn_... | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P21850_001 | Banana | nucleus | 82.63 | 81.68 |
| KRH75298 | Soybean | cytosol, nucleus | 28.57 | 74.75 |
| KRH13261 | Soybean | cytosol | 34.75 | 72.58 |
| GSMUA_Achr10P... | Banana | nucleus | 72.59 | 69.37 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 69.88 | 67.04 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 66.41 | 63.94 |
| EES01849 | Sorghum | nucleus | 64.48 | 63.74 |
| KRH23771 | Soybean | nucleus | 66.8 | 63.6 |
| KRH40033 | Soybean | nucleus | 66.02 | 62.87 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 59.46 | 59.0 |
| PGSC0003DMT400008944 | Potato | nucleus | 59.85 | 58.71 |
| Os01t0876800-00 | Rice | nucleus | 67.57 | 58.33 |
| Zm00001d042641_P001 | Maize | nucleus | 65.25 | 57.29 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 64.86 | 56.76 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 64.48 | 56.42 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 64.48 | 56.23 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 29.34 | 50.33 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 63.71 | 48.53 |
| CDY69197 | Canola | nucleus | 42.08 | 48.44 |
| Bra024547.1-P | Field mustard | nucleus | 42.86 | 46.44 |
| CDY04769 | Canola | nucleus | 42.08 | 45.99 |
| CDX73279 | Canola | cytosol | 42.86 | 45.87 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 31.27 | 45.76 |
| AT1G33470.1 | Thale cress | cytosol | 43.24 | 45.71 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.03 | 44.03 |
| Bra012350.1-P | Field mustard | nucleus | 41.7 | 43.37 |
| CDY25759 | Canola | nucleus | 41.31 | 42.97 |
| KRH62942 | Soybean | mitochondrion | 33.59 | 42.65 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 45.95 | 41.03 |
| Os01t0958500-01 | Rice | nucleus | 46.33 | 38.71 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 44.02 | 36.54 |
| Bra010203.1-P | Field mustard | nucleus | 42.86 | 36.39 |
| GSMUA_Achr11P... | Banana | nucleus | 37.07 | 36.23 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 43.63 | 36.22 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 43.24 | 35.78 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 32.43 | 35.59 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 43.24 | 35.44 |
| EES02078 | Sorghum | nucleus | 45.95 | 35.21 |
| Zm00001d042042_P001 | Maize | nucleus | 45.56 | 34.71 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 32.05 | 34.44 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 12.36 | 34.41 |
| AT1G22910.3 | Thale cress | nucleus | 44.79 | 33.43 |
| CDY67263 | Canola | nucleus | 42.08 | 33.23 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.2 | 32.58 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 33.2 | 30.82 |
| CDY13339 | Canola | mitochondrion | 18.53 | 28.57 |
| CDY21399 | Canola | mitochondrion | 13.51 | 24.14 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 54.44 | 21.14 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 13.9 | 19.89 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 11.2 | 19.73 |
| GSMUA_Achr10P... | Banana | nucleus | 17.37 | 19.48 |
| GSMUA_Achr10P... | Banana | nucleus | 16.6 | 17.34 |
| GSMUA_Achr10P... | Banana | nucleus | 21.62 | 16.82 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 21.62 | 16.62 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 20.46 | 15.82 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 13.9 | 15.65 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 22.78 | 15.21 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 21.24 | 14.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.53 | 14.59 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 18.92 | 14.45 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 18.53 | 14.2 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 20.08 | 13.72 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 17.76 | 12.81 |
| GSMUA_Achr10P... | Banana | nucleus | 21.24 | 12.5 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 20.85 | 12.39 |
| GSMUA_Achr10P... | Banana | nucleus | 20.46 | 11.52 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 18.92 | 11.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.53 | 11.19 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 20.08 | 11.16 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 18.92 | 11.09 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 18.53 | 10.86 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 20.85 | 10.8 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 13.13 | 10.33 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 16.22 | 9.5 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 19.69 | 7.51 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 9.65 | 6.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P08440_001 | EnsemblPlants:GSMUA_Achr8T08440_001 | EnsemblPlantsGene:GSMUA_Achr8G08440_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294D532 | UniProt:M0TNP7 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G08440_001]
Coordinates
chr8:-:5636381..5640417
Molecular Weight (calculated)
27382.2 Da
IEP (calculated)
8.671
GRAVY (calculated)
-0.194
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPNVAGQFG DTTYTKIFVG GLAWETQSDT MRNYFEQFGE ILEAVVITDK STGRSKGYGF VTFREPAAAM RACVDPSPVI DGRRANCNLA SLGAHRSTPT
101: TPPHGGNRSL RMVKSFHTGY QGGMAAAFAS PASFPHYAVQ QGAPYGLYGY SPYSSEYSYP MSYYNVFGGA TAQYPVHGSA AGTVTGTTAF YPYFQFGQGG
201: GGGATVGHGY SIPYPPILHY SAVASTTTGL TGFMQHLGGP LSIPPSPPAQ PVCFPLKQA
101: TPPHGGNRSL RMVKSFHTGY QGGMAAAFAS PASFPHYAVQ QGAPYGLYGY SPYSSEYSYP MSYYNVFGGA TAQYPVHGSA AGTVTGTTAF YPYFQFGQGG
201: GGGATVGHGY SIPYPPILHY SAVASTTTGL TGFMQHLGGP LSIPPSPPAQ PVCFPLKQA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.