Factsheet for GSMUA_AchrUn_randomP12830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	35.27	53.46
GSMUA_Achr4P09830_001	Banana	mitochondrion	32.37	51.66
AT5G53720.1	Thale cress	cytosol	20.75	50.0
CDY51790	Canola	cytosol	21.99	49.53
CDY28822	Canola	cytosol, nucleus, plastid	22.41	48.21
GSMUA_Achr9P14920_001	Banana	plastid	34.02	46.33
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	41.91	41.91
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	47.3	39.31
GSMUA_Achr5P17700_001	Banana	cytosol	14.11	36.56
GSMUA_Achr8P23460_001	Banana	nucleus	35.27	36.02
AT5G11412.1	Thale cress	endoplasmic reticulum	26.14	36.0
PGSC0003DMT400025900	Potato	nucleus	41.08	34.49
GSMUA_Achr3P21850_001	Banana	nucleus	36.93	33.97
GSMUA_Achr8P08440_001	Banana	nucleus	34.44	32.05
AT5G53680.1	Thale cress	cytosol	22.41	31.95
GSMUA_Achr10P...	Banana	nucleus	35.68	31.73
GSMUA_Achr5P05400_001	Banana	mitochondrion	34.44	31.44
KRH53608	Soybean	nucleus	31.95	31.3
KRH64318	Soybean	nucleus	33.2	31.13
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	34.85	31.11
GSMUA_Achr11P...	Banana	nucleus	29.88	27.17
GSMUA_Achr3P13820_001	Banana	cytosol	29.88	25.81
GSMUA_Achr4P32300_001	Banana	nucleus	14.11	23.13
GSMUA_Achr10P...	Banana	nucleus	20.33	21.21
GSMUA_Achr7P00730_001	Banana	cytosol	14.94	19.89
AT3G06970.1	Thale cress	nucleus	21.58	16.4
Bra029612.1-P	Field mustard	nucleus	19.5	16.38
GSMUA_Achr9P12410_001	Banana	nucleus	21.58	15.52
CDY08023	Canola	nucleus	21.99	14.72
GSMUA_Achr10P...	Banana	nucleus	14.94	14.52
CDY05301	Canola	nucleus	20.75	14.24
CDX74070	Canola	cytosol	21.16	14.17
CDY24657	Canola	nucleus	19.92	14.12
Bra001228.1-P	Field mustard	cytosol	21.16	14.09
GSMUA_Achr9P12880_001	Banana	cytosol	12.86	13.48
GSMUA_Achr5P09550_001	Banana	nucleus	20.75	13.44
GSMUA_Achr5P09540_001	Banana	nucleus	20.75	12.89
GSMUA_AchrUn_...	Banana	nucleus	21.58	12.12
GSMUA_Achr10P...	Banana	nucleus	16.6	12.01
GSMUA_Achr6P24180_001	Banana	cytosol	33.2	11.99
GSMUA_Achr7P13480_001	Banana	nucleus	16.6	11.87
GSMUA_Achr4P09210_001	Banana	nucleus	20.33	11.09
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	19.5	10.83
GSMUA_Achr6P15950_001	Banana	nucleus	20.33	10.52
GSMUA_Achr2P14710_001	Banana	cytosol	14.94	10.03
GSMUA_Achr8P25380_001	Banana	nucleus	15.35	9.76
GSMUA_Achr1P09440_001	Banana	cytosol	13.69	9.73
GSMUA_Achr1P19260_001	Banana	nucleus	13.28	9.47
GSMUA_AchrUn_...	Banana	cytosol	12.86	9.42
GSMUA_Achr10P...	Banana	nucleus	17.01	9.32
GSMUA_Achr10P...	Banana	nucleus	17.01	8.91
GSMUA_Achr4P33100_001	Banana	nucleus	15.77	8.6
GSMUA_Achr1P10970_001	Banana	nucleus	15.35	8.49
GSMUA_Achr6P10970_001	Banana	nucleus	17.43	8.4
GSMUA_Achr4P28100_001	Banana	nucleus	13.69	7.47
GSMUA_Achr4P24260_001	Banana	cytosol	9.13	6.69
GSMUA_Achr3P02300_001	Banana	nucleus	17.84	6.33
GSMUA_Achr5P17690_001	Banana	nucleus	3.73	2.23

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12830_001	EnsemblPlants:GSMUA_AchrUn_randomT12830_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12830_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00029534DA	UniProt:M0U8P2	MapMan:35.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12830_001]

Coordinates

chrchrUn_random:+:62275955..62279372

Molecular Weight (calculated)

26778.2 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.011

Length

241 amino acids

Sequence
(BLAST)

001: MIWHKCSSWK ASGCCQSRTP IPHLLSGFYE RQLGFPRLIT PPTPLPDSSF QFSSSWLRFR FLLGVCSMAF HHPGPGSASG SASSSSSGFH FLNSPFGDTT
101: LTKVFVGGLA WETKSETLRR HFEQFGEILE AVVITDKNTG RSKGYGFVTF RQSESAKRAC VDPSPVIDGR RANCNLASLG RPRPALQFGG IALYMLEILA
201: PTLEVCWFHE GHMSEVLLIN HQFLLATNKG FLIHHIGWLI F

Best Arabidopsis Sequence Match ( AT1G20880.2 )
(BLAST)

001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.