Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 65.61 | 65.91 |
| GSMUA_Achr10P... | Banana | nucleus | 65.38 | 62.83 |
| Solyc04g014820.2.1 | Tomato | cytosol | 35.97 | 59.33 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 63.35 | 58.58 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 65.61 | 58.0 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 62.67 | 57.95 |
| KRH14098 | Soybean | nucleus | 61.99 | 57.2 |
| KRH74025 | Soybean | nucleus | 61.31 | 57.05 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 11.99 | 56.99 |
| PGSC0003DMT400037271 | Potato | nucleus | 59.95 | 56.38 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 58.6 | 55.94 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 58.6 | 55.94 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 58.14 | 55.51 |
| TraesCSU01G068500.1 | Wheat | nucleus | 58.14 | 55.51 |
| Os11t0637700-01 | Rice | plasma membrane | 58.37 | 55.25 |
| Solyc10g006050.2.1 | Tomato | nucleus | 53.17 | 54.27 |
| Zm00001d007772_P001 | Maize | nucleus | 54.75 | 53.9 |
| KRH46297 | Soybean | nucleus | 57.92 | 53.44 |
| EER98147 | Sorghum | nucleus | 54.75 | 53.42 |
| PGSC0003DMT400076643 | Potato | nucleus | 57.24 | 53.38 |
| EER96020 | Sorghum | nucleus | 54.75 | 53.19 |
| Zm00001d019079_P001 | Maize | cytosol | 53.85 | 53.12 |
| Solyc07g048030.2.1 | Tomato | nucleus | 52.49 | 53.09 |
| GSMUA_Achr10P... | Banana | nucleus | 29.64 | 52.82 |
| KRG98573 | Soybean | nucleus | 57.24 | 52.82 |
| KRH73860 | Soybean | nucleus | 56.56 | 52.41 |
| Solyc12g014600.1.1 | Tomato | nucleus | 51.81 | 52.4 |
| Os07t0584500-01 | Rice | nucleus | 55.43 | 51.91 |
| KRH14284 | Soybean | nucleus | 56.11 | 51.88 |
| EER97452 | Sorghum | nucleus | 55.2 | 51.8 |
| Zm00001d019084_P002 | Maize | nucleus | 52.94 | 51.54 |
| PGSC0003DMT400074192 | Potato | nucleus | 54.75 | 51.05 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 53.85 | 50.64 |
| Zm00001d006704_P002 | Maize | nucleus | 55.2 | 50.41 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 53.62 | 50.32 |
| Solyc12g006180.1.1 | Tomato | nucleus | 49.77 | 50.23 |
| CDX74030 | Canola | nucleus | 52.71 | 49.36 |
| AT3G07810.2 | Thale cress | nucleus | 55.2 | 49.29 |
| Bra001267.1-P | Field mustard | nucleus | 52.49 | 49.26 |
| CDY07975 | Canola | nucleus | 52.49 | 49.26 |
| PGSC0003DMT400034757 | Potato | nucleus | 52.04 | 49.15 |
| Bra040031.1-P | Field mustard | nucleus | 53.85 | 48.97 |
| CDY22136 | Canola | nucleus | 53.85 | 48.97 |
| CDY66272 | Canola | nucleus | 54.07 | 48.88 |
| Bra028973.1-P | Field mustard | nucleus | 47.51 | 48.5 |
| CDY35966 | Canola | nucleus | 54.07 | 48.38 |
| Solyc11g012470.1.1 | Tomato | nucleus | 46.61 | 48.13 |
| Bra029681.1-P | Field mustard | nucleus | 54.3 | 47.9 |
| CDY36753 | Canola | nucleus | 47.06 | 47.82 |
| AT4G26650.1 | Thale cress | nucleus | 49.09 | 47.69 |
| CDY11989 | Canola | nucleus | 46.61 | 47.69 |
| PGSC0003DMT400060554 | Potato | nucleus | 50.68 | 47.66 |
| CDX92807 | Canola | nucleus | 47.51 | 46.67 |
| CDY46690 | Canola | nucleus | 44.57 | 46.03 |
| Bra019094.1-P | Field mustard | nucleus | 48.19 | 46.0 |
| CDY46689 | Canola | nucleus | 48.19 | 46.0 |
| CDX94301 | Canola | nucleus | 45.7 | 45.7 |
| OQU83904 | Sorghum | nucleus | 46.38 | 45.56 |
| CDY50131 | Canola | nucleus | 39.37 | 45.55 |
| Zm00001d019086_P001 | Maize | nucleus | 54.52 | 45.3 |
| Bra021062.1-P | Field mustard | nucleus | 40.05 | 45.15 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 42.31 | 45.06 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 54.98 | 44.92 |
| Bra024928.1-P | Field mustard | nucleus | 42.53 | 44.76 |
| CDX89316 | Canola | endoplasmic reticulum | 45.02 | 44.52 |
| CDY41059 | Canola | nucleus | 42.99 | 44.5 |
| Bra026413.1-P | Field mustard | nucleus | 42.53 | 44.44 |
| TraesCS2A01G190400.1 | Wheat | plastid | 53.39 | 44.44 |
| Bra017475.1-P | Field mustard | nucleus | 42.76 | 44.26 |
| CDX77783 | Canola | nucleus | 42.53 | 44.24 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 40.05 | 43.07 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 43.67 | 42.6 |
| Bra022145.1-P | Field mustard | nucleus | 44.12 | 42.39 |
| AT5G55550.10 | Thale cress | nucleus | 48.42 | 42.21 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 62.9 | 40.94 |
| CDY28918 | Canola | mitochondrion | 43.89 | 40.08 |
| CDX75170 | Canola | extracellular | 14.25 | 38.65 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 35.52 | 36.01 |
| CDY25957 | Canola | nucleus | 43.21 | 34.54 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.57 | 34.35 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 26.02 | 34.02 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 25.57 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 24.66 | 32.73 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 16.74 | 32.17 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 23.3 | 30.56 |
| CDY40554 | Canola | nucleus | 44.34 | 29.88 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.22 | 29.83 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 9.73 | 29.25 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 26.7 | 29.21 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 24.66 | 28.76 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 9.73 | 28.48 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 21.72 | 26.74 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 9.28 | 25.79 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 18.55 | 24.92 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 24.43 | 24.43 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 9.5 | 23.73 |
| GSMUA_Achr10P... | Banana | nucleus | 12.44 | 20.3 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 12.22 | 20.0 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 15.16 | 20.0 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 10.63 | 19.92 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 11.54 | 19.32 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 11.31 | 19.08 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 12.44 | 18.97 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 11.09 | 18.92 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 15.84 | 18.82 |
| GSMUA_Achr11P... | Banana | nucleus | 10.86 | 18.11 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 15.61 | 17.78 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 10.63 | 16.85 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 15.84 | 16.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 8.6 | 15.77 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 16.29 | 15.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.57 | 13.99 |
| GSMUA_Achr10P... | Banana | nucleus | 7.01 | 13.42 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 12.9 | 12.9 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 12.9 | 8.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P33100_001 | EnsemblPlants:GSMUA_Achr4T33100_001 | EnsemblPlantsGene:GSMUA_Achr4G33100_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002969B94 | UniProt:M0SU72 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G33100_001]
Coordinates
chr4:+:29616178..29619365
Molecular Weight (calculated)
47677.3 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.417
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDLGKLFI GGISWDTNED SLRKYFSAFG EVVEAVIMKD RTTGRARGFG FVVFADPAVT ERVVTEKHTI DGRMVEAKKA VPRDDHQFVN KNSSSSIHGS
101: PVPGHTKKIF VGGLSSTITE GDFKKYFDQF GTITDVVVMY DHNTQRPRGF GFITYDSEDA VDKVLLNAFH ELNGKMVEVK RAVPKEPSPG PIMRSSIGGY
201: NYGLNRVNSF VNGYTQGYNA SSVSGYGMRR LDDSRLGSLA GGRNGFASLS PGLGMGMDYE PPLSSTFVGN PGYDNNLGYG RALNPYHNAN SSRYTSLIPY
301: NDVNGNTSSL FSLTSRNVWE NVALNHATKS AISNASMVYT SGNLGFGGGG YIGLGRNSFD RRIAPASPNT NLIASSSGYE GSYAKLYGAT SVYGDPTWGS
401: SSSEFDATGS FSIKLNNSNS DVTGNGFADY MAGYNVSNNR ES
101: PVPGHTKKIF VGGLSSTITE GDFKKYFDQF GTITDVVVMY DHNTQRPRGF GFITYDSEDA VDKVLLNAFH ELNGKMVEVK RAVPKEPSPG PIMRSSIGGY
201: NYGLNRVNSF VNGYTQGYNA SSVSGYGMRR LDDSRLGSLA GGRNGFASLS PGLGMGMDYE PPLSSTFVGN PGYDNNLGYG RALNPYHNAN SSRYTSLIPY
301: NDVNGNTSSL FSLTSRNVWE NVALNHATKS AISNASMVYT SGNLGFGGGG YIGLGRNSFD RRIAPASPNT NLIASSSGYE GSYAKLYGAT SVYGDPTWGS
401: SSSEFDATGS FSIKLNNSNS DVTGNGFADY MAGYNVSNNR ES
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.