Factsheet for Bra040031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22136	Canola	nucleus	100.0	100.0
Bra001267.1-P	Field mustard	nucleus	86.63	89.38
AT3G07810.2	Thale cress	nucleus	90.12	88.48
Bra029681.1-P	Field mustard	nucleus	90.33	87.62
GSMUA_Achr10P...	Banana	nucleus	56.17	59.35
GSMUA_Achr10P...	Banana	nucleus	53.7	59.32
TraesCS4D01G152200.1	Wheat	nucleus	53.7	56.37
TraesCS4A01G150600.1	Wheat	nucleus	53.7	56.37
HORVU0Hr1G008280.1	Barley	nucleus	53.7	56.37
Os11t0637700-01	Rice	plasma membrane	53.91	56.1
TraesCSU01G068500.1	Wheat	nucleus	53.29	55.94
GSMUA_Achr6P10970_001	Banana	nucleus	57.2	55.6
GSMUA_Achr4P33100_001	Banana	nucleus	48.97	53.85
Zm00001d007772_P001	Maize	nucleus	48.56	52.56
Zm00001d019079_P001	Maize	cytosol	47.53	51.56
EER98147	Sorghum	nucleus	47.74	51.21
EER96020	Sorghum	nucleus	47.53	50.77
Bra024928.1-P	Field mustard	nucleus	43.62	50.48
Os07t0584500-01	Rice	nucleus	48.97	50.42
EER97452	Sorghum	nucleus	48.77	50.32
TraesCS2B01G216600.2	Wheat	cytosol	48.77	50.32
TraesCS2D01G197500.2	Wheat	nucleus	48.56	50.21
Zm00001d019084_P002	Maize	nucleus	46.71	50.0
Bra028973.1-P	Field mustard	nucleus	43.83	49.19
Bra026413.1-P	Field mustard	nucleus	42.8	49.17
Bra017475.1-P	Field mustard	nucleus	42.8	48.71
Zm00001d006704_P002	Maize	nucleus	48.15	48.35
Bra019094.1-P	Field mustard	nucleus	45.88	48.16
Bra021062.1-P	Field mustard	nucleus	37.04	45.92
Bra022145.1-P	Field mustard	nucleus	43.42	45.87
OQU83904	Sorghum	nucleus	41.98	45.33
TraesCS2A01G190400.1	Wheat	plastid	48.35	44.26
Zm00001d019086_P001	Maize	nucleus	47.94	43.8
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.0	43.59
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	47.94	43.07
Bra010757.1-P	Field mustard	nucleus	31.89	40.58
Bra021850.1-P	Field mustard	nucleus	30.45	40.33
Bra022938.1-P	Field mustard	nucleus	33.54	39.95
Bra005496.1-P	Field mustard	nucleus	30.86	39.89
GSMUA_Achr3P02300_001	Banana	nucleus	54.53	39.03
Bra039380.1-P	Field mustard	nucleus	26.54	35.64
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	24.49	32.69
Bra025568.1-P	Field mustard	nucleus	29.63	26.42
Bra017802.1-P	Field mustard	nucleus	20.58	24.51
Bra007096.1-P	Field mustard	nucleus	11.73	22.01
Bra012254.1-P	Field mustard	nucleus	10.29	20.75
Bra025852.1-P	Field mustard	nucleus	11.11	20.69
Bra016445.1-P	Field mustard	nucleus	10.91	20.54
Bra024547.1-P	Field mustard	nucleus	10.08	20.5
Bra012350.1-P	Field mustard	nucleus	10.29	20.08
Bra038113.1-P	Field mustard	nucleus	16.87	19.81
Bra039664.1-P	Field mustard	nucleus	16.46	19.28
Bra003651.1-P	Field mustard	nucleus	10.49	18.82
Bra014667.1-P	Field mustard	nucleus	11.32	18.03
Bra031385.1-P	Field mustard	nucleus	10.7	17.93
Bra004508.1-P	Field mustard	nucleus	11.32	17.63
Bra010203.1-P	Field mustard	nucleus	10.91	17.38
Bra012321.1-P	Field mustard	nucleus	10.29	17.3
Bra040485.1-P	Field mustard	nucleus	11.52	17.18
Bra007277.1-P	Field mustard	nucleus	15.64	16.93
Bra016954.1-P	Field mustard	nucleus	15.23	16.82
Bra031230.1-P	Field mustard	nucleus	10.49	16.61
Bra030265.1-P	Field mustard	nucleus	11.52	15.3
Bra029612.1-P	Field mustard	nucleus	8.85	14.98
Bra001228.1-P	Field mustard	cytosol	10.91	14.64
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.26	14.42

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra040031	EnsemblPlants:Bra040031.1	EnsemblPlants:Bra040031.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4FG07	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544756	SEG:seg

Description

AT3G07810 (E=2e-147) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA01:-:27850619..27852594

Molecular Weight (calculated)

50261.6 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.505

Length

486 amino acids

Sequence
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHSI DGRLVEAKKA VPRDDQNTVR SNSSSIQGSP
101: GGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTPTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP SPARSPLGAG
201: YSYGVSRVNN LLNGYAQGFS PGAVGGYGLR MDGRFSPVGA GRTGFANFGS GYGMNVNFEQ GLPTGFTGGN SFNGNVDYGR GMSPYYIGNT NRFGPGGGYE
301: GGNGGGGGGN SSFFSSVTRN LWGNNGGLNS NSNTYMGGTT SGNNTLSGPF GNSWGAPGGG GGSNGVSNES MKFGYGGNGE SGFGLGTRNI GPSKAAPSSS
401: FSSASVANNT GYDGAGLAEF YGNGAVYSDP TWRSSAPETE GPGSFSYGIG GGGGGGGPSS DVSARSSSPG YVGSYKRQSN RGNLSS

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.