Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21356 | Canola | nucleus | 99.66 | 99.66 |
| Bra012321.1-P | Field mustard | nucleus | 86.9 | 87.2 |
| AT1G22330.1 | Thale cress | nucleus | 86.55 | 86.25 |
| Bra003651.1-P | Field mustard | nucleus | 64.14 | 68.63 |
| KRH16743 | Soybean | nucleus | 53.1 | 56.2 |
| KRH18921 | Soybean | nucleus | 52.76 | 55.43 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 52.41 | 55.07 |
| Solyc04g074310.2.1 | Tomato | nucleus | 51.38 | 50.85 |
| KRH62327 | Soybean | nucleus | 48.62 | 49.13 |
| KRH53044 | Soybean | nucleus | 47.59 | 48.08 |
| Bra012254.1-P | Field mustard | nucleus | 33.1 | 39.83 |
| Bra016445.1-P | Field mustard | nucleus | 34.48 | 38.76 |
| Bra025852.1-P | Field mustard | nucleus | 34.14 | 37.93 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 8.97 | 33.33 |
| Bra024547.1-P | Field mustard | nucleus | 27.24 | 33.05 |
| Bra004508.1-P | Field mustard | nucleus | 35.17 | 32.69 |
| Bra012350.1-P | Field mustard | nucleus | 27.59 | 32.13 |
| Bra007096.1-P | Field mustard | nucleus | 28.62 | 32.05 |
| Bra040485.1-P | Field mustard | nucleus | 35.86 | 31.9 |
| Bra010203.1-P | Field mustard | nucleus | 29.66 | 28.2 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 28.62 | 26.6 |
| Bra029612.1-P | Field mustard | nucleus | 17.24 | 17.42 |
| Bra039664.1-P | Field mustard | nucleus | 22.07 | 15.42 |
| Bra031230.1-P | Field mustard | nucleus | 16.21 | 15.31 |
| Bra038113.1-P | Field mustard | nucleus | 21.38 | 14.98 |
| Bra001228.1-P | Field mustard | cytosol | 17.24 | 13.81 |
| Bra005496.1-P | Field mustard | nucleus | 16.21 | 12.5 |
| Bra024928.1-P | Field mustard | nucleus | 17.59 | 12.14 |
| Bra014667.1-P | Field mustard | nucleus | 12.76 | 12.13 |
| Bra007277.1-P | Field mustard | nucleus | 18.28 | 11.8 |
| Bra010757.1-P | Field mustard | nucleus | 15.17 | 11.52 |
| Bra021850.1-P | Field mustard | nucleus | 14.48 | 11.44 |
| Bra017475.1-P | Field mustard | nucleus | 16.55 | 11.24 |
| Bra001267.1-P | Field mustard | nucleus | 17.93 | 11.04 |
| Bra016954.1-P | Field mustard | nucleus | 16.55 | 10.91 |
| Bra022145.1-P | Field mustard | nucleus | 17.24 | 10.87 |
| Bra039380.1-P | Field mustard | nucleus | 13.45 | 10.77 |
| Bra021062.1-P | Field mustard | nucleus | 14.48 | 10.71 |
| Bra040031.1-P | Field mustard | nucleus | 17.93 | 10.7 |
| Bra022938.1-P | Field mustard | nucleus | 14.83 | 10.54 |
| Bra029681.1-P | Field mustard | nucleus | 17.24 | 9.98 |
| Bra017802.1-P | Field mustard | nucleus | 13.79 | 9.8 |
| Bra028973.1-P | Field mustard | nucleus | 14.14 | 9.47 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 11.72 | 9.34 |
| Bra030265.1-P | Field mustard | nucleus | 11.72 | 9.29 |
| Bra026413.1-P | Field mustard | nucleus | 13.1 | 8.98 |
| Bra019094.1-P | Field mustard | nucleus | 13.79 | 8.64 |
| Bra025568.1-P | Field mustard | nucleus | 15.17 | 8.07 |
Protein Annotations
| EnsemblPlants:Bra031385.1 | EnsemblPlants:Bra031385.1-P | EnsemblPlantsGene:Bra031385 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000254751A | UniProt:M4ERG1 | MapMan:35.1 | : |
Description
AT1G22330 (E=2e-085) | RNA binding / nucleic acid binding / nucleotide binding
Coordinates
chrA05:-:15590852..15593621
Molecular Weight (calculated)
31926.3 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.903
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNTSYYRS PFGDTTFTKV FVGGLAWETP TEEMRRYFDQ FGEILEAVII TDKTTGKSKG YGFVTFREPD SATRAVADPN PVIDGRKANC NIASFGRPRP
101: STPRGRGQGG SPSQYQGGGQ SGYTGMAAPL QQAATAQLMY PPYGYTYNSE YGYPQALYNT QLQQAQYYQQ QMYGGGATSP SSSNIMPSPY YYFQAPSPRP
201: YPHQHHQHYA HHIHQQQQQQ RLPSTSSYLI YPYNSEAPTT SSNAPPSQEP ISSSTESQAT THQVSGEGGE FDARDAPESA TTNRELTSSS
101: STPRGRGQGG SPSQYQGGGQ SGYTGMAAPL QQAATAQLMY PPYGYTYNSE YGYPQALYNT QLQQAQYYQQ QMYGGGATSP SSSNIMPSPY YYFQAPSPRP
201: YPHQHHQHYA HHIHQQQQQQ RLPSTSSYLI YPYNSEAPTT SSNAPPSQEP ISSSTESQAT THQVSGEGGE FDARDAPESA TTNRELTSSS
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.