Factsheet for Bra031230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031230.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22090.2	Bra031230.1-P	AT2G22090.2	12024044

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13782	Canola	nucleus	99.67	99.67
AT2G22090.2	Thale cress	nucleus	81.43	72.05
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	10.1	39.74
VIT_07s0031g01290.t01	Wine grape	nucleus	37.78	29.59
Solyc04g011560.2.1	Tomato	nucleus	39.74	25.96
Bra014667.1-P	Field mustard	nucleus	25.08	25.25
PGSC0003DMT400016249	Potato	nucleus	40.39	25.2
Bra030265.1-P	Field mustard	nucleus	28.99	24.32
Bra007277.1-P	Field mustard	nucleus	31.92	21.83
Bra012254.1-P	Field mustard	nucleus	16.29	20.75
Bra039664.1-P	Field mustard	nucleus	28.01	20.72
Bra016954.1-P	Field mustard	nucleus	29.64	20.68
Bra038113.1-P	Field mustard	nucleus	27.36	20.29
Bra025852.1-P	Field mustard	nucleus	16.94	19.92
Bra016445.1-P	Field mustard	nucleus	16.61	19.77
Bra024547.1-P	Field mustard	nucleus	14.33	18.41
Bra012350.1-P	Field mustard	nucleus	14.66	18.07
Bra003651.1-P	Field mustard	nucleus	15.31	17.34
Bra012321.1-P	Field mustard	nucleus	15.31	16.26
Bra031385.1-P	Field mustard	nucleus	15.31	16.21
Bra010203.1-P	Field mustard	nucleus	15.31	15.41
Bra004508.1-P	Field mustard	nucleus	15.31	15.06
Bra007096.1-P	Field mustard	nucleus	12.38	14.67
Bra029612.1-P	Field mustard	nucleus	13.36	14.29
Bra040485.1-P	Field mustard	nucleus	14.98	14.11
Bra005496.1-P	Field mustard	nucleus	15.31	12.5
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	12.38	12.18
Bra010757.1-P	Field mustard	nucleus	14.98	12.04
Bra022938.1-P	Field mustard	nucleus	15.96	12.01
Bra021850.1-P	Field mustard	nucleus	14.01	11.72
Bra039380.1-P	Field mustard	nucleus	13.68	11.6
Bra021062.1-P	Field mustard	nucleus	14.66	11.48
Bra001228.1-P	Field mustard	cytosol	13.03	11.05
Bra024928.1-P	Field mustard	nucleus	14.98	10.95
Bra026413.1-P	Field mustard	nucleus	14.98	10.87
Bra001267.1-P	Field mustard	nucleus	16.61	10.83
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.7	10.71
Bra017802.1-P	Field mustard	nucleus	14.01	10.54
Bra040031.1-P	Field mustard	nucleus	16.61	10.49
Bra029681.1-P	Field mustard	nucleus	16.61	10.18
Bra017475.1-P	Field mustard	nucleus	14.01	10.07
Bra022145.1-P	Field mustard	nucleus	14.98	10.0
Bra019094.1-P	Field mustard	nucleus	14.33	9.5
Bra028973.1-P	Field mustard	nucleus	12.7	9.01
Bra025568.1-P	Field mustard	nucleus	15.64	8.81

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra031230	EnsemblPlants:Bra031230.1	EnsemblPlants:Bra031230.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0017091	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4ER07
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578	PANTHER:PTHR44578:SF5	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002542F59	SEG:seg	:

Description

AT2G22090 (E=3e-081) UBA1A | UBP1 interacting protein 1a (UBA1a)

Coordinates

chrA09:+:31892722..31893645

Molecular Weight (calculated)

32510.1 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.548

Length

307 amino acids

Sequence
(BLAST)

001: MAKTLDKSKK RKFVKSDKTN KKQKTNQPES STTPYSTSSS SSDSSDSESE QEFDPEELRD LLQPYSKDQL VDLLCSSPQI GSSIYSSVLE AADRDVTHRK
101: IFVYGLPWET TRETLSGVFE GFGEIEECTV VIDKNTGKAK GFGFVTFTSR RGAREALKEP KKRILSRTAT CQLAAMGPAG SGKGQEQTGP VKISLGQAQQ
201: QQQVFNGGGM AAASPFMIGN QFHPVYGGGM MANPALAVAA GGGGYMYPML ASALGQMGGI GDPGALGAYF RGGQSLPSAY SDSDTGRKGS GKDSEAAGGS
301: FQGYANY

Best Arabidopsis Sequence Match ( AT2G22090.1 )
(BLAST)

001: MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS

Arabidopsis Description

UBA1ARNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.