Factsheet for Bra004508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80046	Canola	nucleus	100.0	98.73
CDY41557	Canola	nucleus	97.76	96.52
CDY41556	Canola	nucleus	89.42	96.21
Bra040485.1-P	Field mustard	nucleus	90.71	86.81
AT2G46780.1	Thale cress	nucleus	87.82	81.55
VIT_15s0048g02630.t01	Wine grape	nucleus	48.72	56.93
KRH47819	Soybean	nucleus	46.79	49.32
KRH06384	Soybean	nucleus	47.44	49.17
KRH06373	Soybean	nucleus	43.27	48.74
KRH47808	Soybean	nucleus	40.71	44.41
Bra024547.1-P	Field mustard	nucleus	30.77	40.17
Bra025852.1-P	Field mustard	nucleus	33.33	39.85
Bra016445.1-P	Field mustard	nucleus	32.37	39.15
Bra012254.1-P	Field mustard	nucleus	30.13	39.0
Bra012350.1-P	Field mustard	nucleus	29.49	36.95
Bra010203.1-P	Field mustard	nucleus	34.62	35.41
Bra031385.1-P	Field mustard	nucleus	32.69	35.17
Bra003651.1-P	Field mustard	nucleus	30.45	35.06
Bra007096.1-P	Field mustard	nucleus	28.85	34.75
Bra012321.1-P	Field mustard	nucleus	32.05	34.6
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	8.01	32.05
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	26.6	26.6
Bra029612.1-P	Field mustard	nucleus	17.31	18.82
Bra031230.1-P	Field mustard	nucleus	15.06	15.31
Bra038113.1-P	Field mustard	nucleus	19.55	14.73
Bra039664.1-P	Field mustard	nucleus	19.23	14.46
Bra021850.1-P	Field mustard	nucleus	16.67	14.17
Bra005496.1-P	Field mustard	nucleus	16.99	14.1
Bra001228.1-P	Field mustard	cytosol	16.35	14.09
Bra022938.1-P	Field mustard	nucleus	17.31	13.24
Bra024928.1-P	Field mustard	nucleus	17.31	12.86
Bra016954.1-P	Field mustard	nucleus	17.95	12.73
Bra010757.1-P	Field mustard	nucleus	15.38	12.57
Bra021062.1-P	Field mustard	nucleus	15.71	12.5
Bra017475.1-P	Field mustard	nucleus	16.67	12.18
Bra001267.1-P	Field mustard	nucleus	18.27	12.1
Bra030265.1-P	Field mustard	nucleus	14.1	12.02
Bra022145.1-P	Field mustard	nucleus	17.63	11.96
Bra039380.1-P	Field mustard	nucleus	13.78	11.88
Bra017802.1-P	Field mustard	nucleus	15.06	11.52
Bra014667.1-P	Field mustard	nucleus	11.22	11.48
Bra029681.1-P	Field mustard	nucleus	18.27	11.38
Bra040031.1-P	Field mustard	nucleus	17.63	11.32
Bra028973.1-P	Field mustard	nucleus	15.71	11.32
Bra007277.1-P	Field mustard	nucleus	16.03	11.14
Bra019094.1-P	Field mustard	nucleus	16.35	11.02
Bra026413.1-P	Field mustard	nucleus	14.74	10.87
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.5	10.71
Bra025568.1-P	Field mustard	nucleus	16.35	9.36

Protein Annotations

EnsemblPlants:Bra004508.1	EnsemblPlants:Bra004508.1-P	EnsemblPlantsGene:Bra004508	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44374	PANTHER:PTHR44374:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025472D9	UniProt:M4CJX4	MapMan:35.1	:

Description

AT2G46780 (E=1e-107) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA05:-:487578..488990

Molecular Weight (calculated)

33764.3 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.557

Length

312 amino acids

Sequence
(BLAST)

001: MAQQQRQQFQ MGDTKLTKIF VGGLAWETQK DTMRRYFEQF GEIVEAVVIS DKNTGRSKGY GFVTFKEGEA AMRACQNMNP VIDGRRANCN LAFLGAHKPR
101: PPTSPRHGTG RFRSPGGAGL VAPSPQFRGS SSSSAFVQHT GQFPIPYSAY GFSGYSQEGM YPMNYYNHHL YGGQQFSPYM GPPTSGSTGM FHGYYPYYPQ
201: YNPAQSSNQA QAPAQTHHQG FSFQYTTPPA PPVLHYPYLP HQQFSSQPPP PPILSLPTSL ALSLASSAPS SSSSASTSAA TTATKTVVIT TTAEAEASSN
301: KDGHEAVTSS TI

Best Arabidopsis Sequence Match ( AT2G46780.1 )
(BLAST)

001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG

Arabidopsis Description

At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.