Factsheet for Bra012321.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46642	Canola	nucleus	98.27	98.27
Bra031385.1-P	Field mustard	nucleus	87.2	86.9
AT1G22330.1	Thale cress	nucleus	82.7	82.13
CDY00446	Canola	nucleus	87.89	74.71
Bra003651.1-P	Field mustard	nucleus	61.25	65.31
KRH16743	Soybean	nucleus	51.56	54.38
VIT_18s0001g05840.t01	Wine grape	nucleus	51.9	54.35
KRH18921	Soybean	nucleus	51.56	53.99
Solyc04g074310.2.1	Tomato	nucleus	50.52	49.83
KRH62327	Soybean	nucleus	48.1	48.43
KRH53044	Soybean	nucleus	47.06	47.39
Bra012254.1-P	Field mustard	nucleus	32.53	39.0
Bra016445.1-P	Field mustard	nucleus	34.26	38.37
Bra025852.1-P	Field mustard	nucleus	33.91	37.55
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	9.34	34.62
Bra024547.1-P	Field mustard	nucleus	27.68	33.47
Bra007096.1-P	Field mustard	nucleus	29.41	32.82
Bra012350.1-P	Field mustard	nucleus	28.03	32.53
Bra004508.1-P	Field mustard	nucleus	34.6	32.05
Bra040485.1-P	Field mustard	nucleus	35.29	31.29
Bra010203.1-P	Field mustard	nucleus	30.1	28.52
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	28.03	25.96
Bra029612.1-P	Field mustard	nucleus	16.95	17.07
Bra031230.1-P	Field mustard	nucleus	16.26	15.31
Bra039664.1-P	Field mustard	nucleus	21.11	14.7
Bra001228.1-P	Field mustard	cytosol	17.65	14.09
Bra038113.1-P	Field mustard	nucleus	20.07	14.01
Bra005496.1-P	Field mustard	nucleus	15.92	12.23
Bra024928.1-P	Field mustard	nucleus	16.95	11.67
Bra014667.1-P	Field mustard	nucleus	12.11	11.48
Bra007277.1-P	Field mustard	nucleus	17.65	11.36
Bra010757.1-P	Field mustard	nucleus	14.88	11.26
Bra021850.1-P	Field mustard	nucleus	14.19	11.17
Bra016954.1-P	Field mustard	nucleus	16.61	10.91
Bra039380.1-P	Field mustard	nucleus	13.49	10.77
Bra017475.1-P	Field mustard	nucleus	15.92	10.77
Bra021062.1-P	Field mustard	nucleus	14.19	10.46
Bra001267.1-P	Field mustard	nucleus	16.95	10.4
Bra022938.1-P	Field mustard	nucleus	14.53	10.29
Bra040031.1-P	Field mustard	nucleus	17.3	10.29
Bra022145.1-P	Field mustard	nucleus	16.26	10.22
Bra029681.1-P	Field mustard	nucleus	16.95	9.78
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.11	9.62
Bra030265.1-P	Field mustard	nucleus	12.11	9.56
Bra017802.1-P	Field mustard	nucleus	13.49	9.56
Bra028973.1-P	Field mustard	nucleus	14.19	9.47
Bra026413.1-P	Field mustard	nucleus	12.8	8.75
Bra025568.1-P	Field mustard	nucleus	15.92	8.44
Bra019094.1-P	Field mustard	nucleus	13.49	8.42

Protein Annotations

EnsemblPlants:Bra012321.1	EnsemblPlants:Bra012321.1-P	EnsemblPlantsGene:Bra012321	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002541496	UniProt:M4D761	MapMan:35.1	:

Description

AT1G22330 (E=1e-083) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA07:-:8542749..8545348

Molecular Weight (calculated)

31832.4 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.799

Length

289 amino acids

Sequence
(BLAST)

001: MSSNTSYYRS PFGDTTFTKV FVGGLAWETP TEEMRRYFEQ FGEILEAVII TDKITGKSKG YGFVTFREPE SATKAVADPN PVIDGRKANC NIASFGQPRP
101: STPRGRGQGG SPSQYQGRGQ SGYSGMPVSL QQAATAQLMY PSYGYTYNSE YGYHQALYNT QLQQAQAQYY QQQMYGGVAT SPSSSNIMPS PYYYLQAPSP
201: RPYSHQHYAH HINHQQQQQQ RLTSASSYLI HPSNFGVPTT FSNAPSSQEP ISSSTESQAP HQVCGGGELD VTDAPESTTT DNREYTSSS

Best Arabidopsis Sequence Match ( AT1G22330.1 )
(BLAST)

001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.