Factsheet for Bra010757.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009045.1-P
Bra010184.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14300.1	Bra010184.1-P	AT2G16950.1	14756317
AT4G14300.1	Bra009045.1-P	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90262	Canola	nucleus	99.74	99.74
CDY12068	Canola	nucleus	91.62	97.77
AT4G14300.1	Thale cress	nucleus	82.98	77.13
Bra021850.1-P	Field mustard	nucleus	57.33	59.67
Bra005496.1-P	Field mustard	nucleus	56.54	57.45
Bra022938.1-P	Field mustard	nucleus	59.95	56.13
VIT_05s0049g01660.t01	Wine grape	nucleus	68.06	56.03
KRH07772	Soybean	cytosol	14.14	55.1
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	10.73	52.56
Solyc09g090520.2.1	Tomato	nucleus	65.18	52.42
Solyc03g005680.2.1	Tomato	nucleus	58.38	52.22
PGSC0003DMT400044195	Potato	nucleus	64.66	52.0
PGSC0003DMT400035000	Potato	nucleus	59.16	51.13
KRH34534	Soybean	nucleus	62.57	50.74
KRG92276	Soybean	endoplasmic reticulum	62.57	50.21
TraesCS1B01G168200.1	Wheat	nucleus	55.5	46.9
TraesCS1A01G150600.1	Wheat	nucleus	55.5	46.7
TraesCS1D01G147600.1	Wheat	nucleus	55.5	46.7
KXG38359	Sorghum	nucleus	55.24	46.58
Zm00001d032739_P001	Maize	nucleus	53.93	46.5
GSMUA_Achr5P17690_001	Banana	nucleus	47.91	45.3
Zm00001d014058_P002	Maize	plastid	55.24	43.78
HORVU1Hr1G039790.1	Barley	nucleus	55.5	41.57
Bra024928.1-P	Field mustard	nucleus	36.91	33.57
Bra017475.1-P	Field mustard	nucleus	37.17	33.26
Bra039380.1-P	Field mustard	nucleus	30.89	32.6
Bra001267.1-P	Field mustard	nucleus	40.05	32.48
Bra040031.1-P	Field mustard	nucleus	40.58	31.89
Bra021062.1-P	Field mustard	nucleus	32.72	31.89
Bra028973.1-P	Field mustard	nucleus	35.08	30.95
Bra029681.1-P	Field mustard	nucleus	40.31	30.74
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	29.06	30.49
Bra022145.1-P	Field mustard	nucleus	36.13	30.0
Bra019094.1-P	Field mustard	nucleus	35.86	29.59
Bra026413.1-P	Field mustard	nucleus	31.94	28.84
Bra025568.1-P	Field mustard	nucleus	33.25	23.3
Bra025852.1-P	Field mustard	nucleus	15.45	22.61
Bra016445.1-P	Field mustard	nucleus	15.18	22.48
Bra017802.1-P	Field mustard	nucleus	23.56	22.06
Bra012254.1-P	Field mustard	nucleus	13.61	21.58
Bra024547.1-P	Field mustard	nucleus	12.83	20.5
Bra012350.1-P	Field mustard	nucleus	13.09	20.08
Bra038113.1-P	Field mustard	nucleus	20.94	19.32
Bra039664.1-P	Field mustard	nucleus	20.68	19.04
Bra010203.1-P	Field mustard	nucleus	14.66	18.36
Bra007096.1-P	Field mustard	nucleus	11.78	17.37
Bra007277.1-P	Field mustard	nucleus	18.85	16.04
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	13.09	16.03
Bra004508.1-P	Field mustard	nucleus	12.57	15.38
Bra031385.1-P	Field mustard	nucleus	11.52	15.17
Bra040485.1-P	Field mustard	nucleus	12.83	15.03
Bra016954.1-P	Field mustard	nucleus	17.28	15.0
Bra031230.1-P	Field mustard	nucleus	12.04	14.98
Bra012321.1-P	Field mustard	nucleus	11.26	14.88
Bra003651.1-P	Field mustard	nucleus	10.47	14.76
Bra029612.1-P	Field mustard	nucleus	10.99	14.63
Bra014667.1-P	Field mustard	nucleus	11.26	14.1
Bra001228.1-P	Field mustard	cytosol	13.35	14.09
Bra030265.1-P	Field mustard	nucleus	12.04	12.57

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra010757	EnsemblPlants:Bra010757.1	EnsemblPlants:Bra010757.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010228	GO:GO:1901000
GO:GO:2000070	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4D2Q4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44291	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002546D2A	SEG:seg	:	:	:	:

Description

AT4G14300 (E=5e-103) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA08:+:16279617..16281156

Molecular Weight (calculated)

39403.1 Da

IEP (calculated)

6.051

GRAVY (calculated)

-0.660

Length

382 amino acids

Sequence
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFSSYG DVSQAIVMRD KLTGRPRGFG FVIFSDPSLL DRVLQDKHHI DSREVDVKRA MSREEQQVSG RSGSFNATRG
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRLYF EQYGPVADVV IMHDQTTSRP RGFGFVSFDS EDAVDRVLQK NFHDLNGKQV EVKRALPKDA NPGGAGRAMG
201: GGGGGGYQGF GGSEGGFDGR MDFNRYMQPQ NVGNGLPSYG GSSGYAAGGG YGNGSNGAGF GGYGGYGAGA GAAYGATGMP GGGYGSSVAP RNAWDTPSAP
301: SGYGNPGGYG NGAAQSGYGA PPAQTQYGYG GYSGSGEAGY GNQAAYGAVG GRPSVGGLNN PGGGYMGGYD PSQGYGLGRQ GQ

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.