Factsheet for TraesCS1B01G168200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G562500.1
TraesCS2B01G426000.1
TraesCS2B01G624100.1
TraesCS2D01G572700.1
TraesCS3A01G329100.1
TraesCS7A01G287800.1
TraesCS7B01G182400.1
TraesCS7D01G290200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	TraesCS7A01G287800.1	AT3G21215.1	21798944
AT2G33410.1	TraesCS7B01G182400.1	AT3G21215.1	21798944
AT2G33410.1	TraesCS7D01G290200.1	AT3G21215.1	21798944
AT4G14300.1	TraesCS2A01G562500.1	AT2G16950.1	14756317
AT4G14300.1	TraesCS2B01G426000.1	AT2G16950.1	14756317
AT4G14300.1	TraesCS2B01G624100.1	AT2G16950.1	14756317
AT4G14300.1	TraesCS2D01G572700.1	AT2G16950.1	14756317
AT4G14300.1	TraesCS3A01G329100.1	AT2G16950.1	14756317

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G147600.1	Wheat	nucleus	99.78	99.34
TraesCS1A01G150600.1	Wheat	nucleus	99.78	99.34
HORVU1Hr1G039790.1	Barley	nucleus	99.11	87.84
KXG38359	Sorghum	nucleus	81.64	81.46
Zm00001d032739_P001	Maize	nucleus	79.65	81.26
Zm00001d014058_P002	Maize	plastid	79.2	74.27
GSMUA_Achr10P...	Banana	nucleus	37.17	67.74
GSMUA_Achr5P17700_001	Banana	cytosol	13.5	65.59
CDY12068	Canola	nucleus	46.02	58.1
AT4G14300.1	Thale cress	nucleus	52.43	57.66
VIT_07s0005g03980.t01	Wine grape	nucleus	55.31	57.6
AT2G33410.1	Thale cress	nucleus	51.11	57.18
Bra005496.1-P	Field mustard	nucleus	47.12	56.65
CDY17173	Canola	nucleus	47.12	56.5
Bra021850.1-P	Field mustard	nucleus	45.8	56.4
CDY67299	Canola	nucleus	47.12	55.91
CDY23739	Canola	nucleus	47.35	55.87
CDX90262	Canola	nucleus	47.12	55.76
GSMUA_Achr1P10970_001	Banana	nucleus	53.76	55.73
CDX79527	Canola	nucleus	50.0	55.66
Bra010757.1-P	Field mustard	nucleus	46.9	55.5
KRH34534	Soybean	nucleus	57.74	55.41
Bra022938.1-P	Field mustard	nucleus	50.0	55.39
CDX84689	Canola	nucleus	50.0	55.39
CDY37724	Canola	nucleus	38.94	54.49
KRG92276	Soybean	endoplasmic reticulum	56.42	53.57
KRH07772	Soybean	cytosol	11.5	53.06
Solyc09g072790.2.1	Tomato	nucleus	36.73	42.13
PGSC0003DMT400009762	Potato	nucleus	36.95	42.07
TraesCS2B01G216600.2	Wheat	cytosol	37.17	35.67
TraesCS7B01G266900.1	Wheat	nucleus	26.99	32.28
TraesCS6B01G217500.1	Wheat	nucleus	29.42	32.13
TraesCS6B01G321300.2	Wheat	nucleus	26.11	31.64
TraesCS7B01G178300.1	Wheat	nucleus	24.11	30.62
TraesCS5B01G410100.1	Wheat	nucleus	22.12	28.49
TraesCS1B01G249300.1	Wheat	cytosol	21.9	27.12
TraesCS3B01G532600.3	Wheat	cytosol	19.47	23.59
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	12.83	20.35
TraesCS3B01G419200.1	Wheat	nucleus	13.27	20.27
TraesCS4B01G225300.1	Wheat	nucleus	11.73	19.41
TraesCS6B01G306600.1	Wheat	plastid	11.95	18.95
TraesCS3B01G562300.3	Wheat	mitochondrion	12.39	17.95
TraesCS3B01G250700.1	Wheat	golgi	17.26	17.73
TraesCS4B01G197500.2	Wheat	cytosol, mitochondrion, nucleus	10.4	15.72
TraesCS7B01G084600.1	Wheat	nucleus	10.18	15.33
TraesCS6B01G348100.1	Wheat	plastid	10.18	14.79
TraesCS2B01G556700.1	Wheat	nucleus	16.37	14.54
TraesCS3B01G211700.1	Wheat	nucleus	13.72	13.69

Protein Annotations

EnsemblPlants:TraesCS1B01G168200.1	EnsemblPlantsGene:TraesCS1B01G168200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	TIGR:cd12325	TIGR:cd12327	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:297724033..297725549

Molecular Weight (calculated)

45090.7 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.659

Length

452 amino acids

Sequence
(BLAST)

001: MESDQGKLFI GGISWETTEE KLQEHFSNFG EVSQAAVMRD KLTGRPRGFG FVVYADPAAV DAALQEPHTL DGRTVDVKRA LSREEQQATK AVNPSAGRNA
101: GGGGGGGGGD AGGARTKKIF VGGLPSSLTD EEFRQYFQTF GAVTDVVVMY DQTTQRPRGF GFITFDSEDA VDRVLHKTFH DLGGKMVEVK RALPREANPG
201: SGGGGRSMGG GGFHSNNGPN SNASSYDGRG DASRYGQAQQ GSGGYPGYGA GAYGSAPTGY GYGHTNPGTT YGNYGSAGYG GVPAAYAGAY GNPSAAASGY
301: QGGPPGANRG PWGSQAPSGY GTGGYAGNAG YGAWNSSSAG GNAPTSQAPG AAAGYGNQGY GYGGYGGDAS YGNHGGYGAY GGRGDGAGNP ATGAASGYGA
401: AGYGSGNGNS GYPNAWTDPS QGGGFGGAVN GASEGQSNYG SGYGGMQPRV AQ

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.