Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009762 | Potato | nucleus | 95.43 | 94.71 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 13.96 | 59.14 |
| GSMUA_Achr10P... | Banana | nucleus | 31.47 | 50.0 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 44.92 | 40.78 |
| Solyc04g014820.2.1 | Tomato | cytosol | 26.65 | 39.18 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 41.12 | 37.16 |
| KXG38359 | Sorghum | nucleus | 42.39 | 36.87 |
| Solyc03g005680.2.1 | Tomato | nucleus | 39.85 | 36.77 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 42.13 | 36.73 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 42.13 | 36.56 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 42.13 | 36.56 |
| Zm00001d032739_P001 | Maize | nucleus | 40.86 | 36.34 |
| Solyc03g121710.2.1 | Tomato | nucleus | 24.11 | 35.32 |
| Solyc09g090520.2.1 | Tomato | nucleus | 42.39 | 35.16 |
| Solyc06g062740.1.1 | Tomato | cytosol | 17.51 | 35.03 |
| Solyc04g077520.2.1 | Tomato | nucleus | 29.95 | 34.6 |
| Zm00001d014058_P002 | Maize | plastid | 40.61 | 33.2 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 42.13 | 32.55 |
| Solyc07g048030.2.1 | Tomato | nucleus | 36.04 | 32.49 |
| Solyc10g006050.2.1 | Tomato | nucleus | 35.28 | 32.1 |
| Solyc12g006180.1.1 | Tomato | nucleus | 34.77 | 31.28 |
| Solyc12g014600.1.1 | Tomato | nucleus | 33.5 | 30.21 |
| Solyc11g012470.1.1 | Tomato | nucleus | 32.74 | 30.14 |
| Solyc07g045240.2.1 | Tomato | nucleus | 25.89 | 29.74 |
| Solyc02g093340.2.1 | Tomato | nucleus | 27.16 | 27.51 |
| Solyc06g062730.1.1 | Tomato | nucleus | 24.37 | 26.16 |
| Solyc02g090910.2.1 | Tomato | nucleus | 22.84 | 23.94 |
| Solyc02g064540.1.1 | Tomato | nucleus | 22.08 | 23.51 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 20.56 | 21.83 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 13.71 | 20.69 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 12.44 | 20.33 |
| Solyc04g049920.2.1 | Tomato | nucleus | 11.68 | 19.09 |
| Solyc04g074310.2.1 | Tomato | nucleus | 13.71 | 18.43 |
| Solyc02g021560.2.1 | Tomato | nucleus | 18.53 | 16.94 |
| Solyc02g082270.2.1 | Tomato | nucleus | 11.93 | 16.67 |
| Solyc12g014210.1.1 | Tomato | nucleus | 12.94 | 15.22 |
| Solyc01g008970.2.1 | Tomato | nucleus | 13.45 | 14.1 |
| Solyc10g081330.1.1 | Tomato | nucleus | 13.96 | 13.19 |
| Solyc04g011560.2.1 | Tomato | nucleus | 15.23 | 12.77 |
Protein Annotations
| EnsemblPlants:Solyc09g072790.2.1 | EnsemblPlantsGene:Solyc09g072790.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000276AF89 | UniProt:K4CUV5 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr9:-:65489577..65492530
Molecular Weight (calculated)
42842.3 Da
IEP (calculated)
6.349
GRAVY (calculated)
-0.595
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDEGKLFV GGLGWDIKED KLRDYFTHYG QVTHAIIMRD RVTGLSRGFA FVVFSDPSVI DAILQEKHTI DGRPVEAKRA LPRAQQQSLR SRLPHASEDT
101: RLVMRNLNNR TRKIFVGGLP SSLTEEEFCQ YFQDYGNVTD KVIMFDPNTG RPRGFGFITF DSEDAVDRVL HKTFHELKNR IVEVKRALPK EANPAGNNYG
201: GGYPGYGSSD PIRFPQPAFC GYTPYNSYGA LNYGYGYGYD PYTFYGGAAR VYMNPSLASI VYGNSLPGAT RNQWSSQNLG HGDFYNLNAS YGASSSLGAS
301: STRGVILSST STSQGHASQN NNQGNGCSMY TENEGPITDS DGNETGDRHT GSAPPNSSSG EATTHANGCS TTTTVFDSST GSPGFPDAVL VSDK
101: RLVMRNLNNR TRKIFVGGLP SSLTEEEFCQ YFQDYGNVTD KVIMFDPNTG RPRGFGFITF DSEDAVDRVL HKTFHELKNR IVEVKRALPK EANPAGNNYG
201: GGYPGYGSSD PIRFPQPAFC GYTPYNSYGA LNYGYGYGYD PYTFYGGAAR VYMNPSLASI VYGNSLPGAT RNQWSSQNLG HGDFYNLNAS YGASSSLGAS
301: STRGVILSST STSQGHASQN NNQGNGCSMY TENEGPITDS DGNETGDRHT GSAPPNSSSG EATTHANGCS TTTTVFDSST GSPGFPDAVL VSDK
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.