Factsheet for Solyc02g093340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032811	Potato	nucleus	97.43	97.43
KRH56541	Soybean	nucleus	37.28	72.5
VIT_14s0066g00480.t01	Wine grape	nucleus	65.81	68.09
KRH07154	Soybean	nucleus	63.5	66.4
KRG94084	Soybean	nucleus	61.95	64.44
KRG93213	Soybean	nucleus	62.21	64.19
Solyc07g045240.2.1	Tomato	nucleus	51.67	58.6
AT5G40490.1	Thale cress	nucleus	61.44	56.5
CDY36357	Canola	nucleus	61.18	43.91
Bra025568.1-P	Field mustard	nucleus	61.18	43.67
CDY42577	Canola	nucleus	61.18	43.67
Solyc03g121710.2.1	Tomato	nucleus	30.08	43.49
Solyc06g062740.1.1	Tomato	cytosol	17.22	34.01
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	29.56	31.0
Solyc09g090520.2.1	Tomato	nucleus	37.28	30.53
Solyc03g005680.2.1	Tomato	nucleus	32.9	29.98
Solyc04g077520.2.1	Tomato	nucleus	26.22	29.91
Solyc04g014820.2.1	Tomato	cytosol	20.57	29.85
Solyc06g062730.1.1	Tomato	nucleus	28.02	29.7
Solyc09g072790.2.1	Tomato	nucleus	27.51	27.16
Solyc12g006180.1.1	Tomato	nucleus	29.56	26.26
Solyc07g048030.2.1	Tomato	nucleus	29.05	25.86
Solyc11g012470.1.1	Tomato	nucleus	28.02	25.47
Solyc12g014600.1.1	Tomato	nucleus	28.02	24.94
Solyc10g006050.2.1	Tomato	nucleus	27.25	24.48
Solyc02g090910.2.1	Tomato	nucleus	23.39	24.2
Solyc02g064540.1.1	Tomato	nucleus	19.79	20.81
Solyc04g049920.2.1	Tomato	nucleus	12.6	20.33
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	13.62	20.31
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	12.08	19.5
Solyc02g021560.2.1	Tomato	nucleus	19.79	17.87
Solyc04g074310.2.1	Tomato	nucleus	12.6	16.72
Solyc02g082270.2.1	Tomato	nucleus	11.83	16.31
Solyc10g081330.1.1	Tomato	nucleus	16.71	15.59
Solyc04g011560.2.1	Tomato	nucleus	18.51	15.32
Solyc12g014210.1.1	Tomato	nucleus	12.34	14.33
Solyc01g008970.2.1	Tomato	nucleus	13.62	14.1

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003730	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006378	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0048576	GO:GO:0048578
GO:GO:0097157	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4BDD0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45276	PANTHER:PTHR45276:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g093340.2	EnsemblPlants:Solyc02g093340.2.1	UniParc:UPI00027684F6	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:54240768..54244371

Molecular Weight (calculated)

40239.2 Da

IEP (calculated)

7.813

GRAVY (calculated)

-0.658

Length

389 amino acids

Sequence
(BLAST)

001: MEEQNGTVNG VKIKLEEEET NDDLRTTPDH QNDAGASQPL TGDGASPGKI FIGGLARETT SAQFVKHFGK YGEIIDSVIM KERRTGQPRG FGFVTYADPS
101: VVDKVIEDDH VINGKQVEIK RTIPRGGGSS SKDFKTKKIF VGGIPTTISE DEFRDFFLKF GEVKEHQIMR DHSTSRSRGF GFITFDTEKS VEDILANGNK
201: LDFSGTQVEI KKAEPKRPNA PQPAPFRRQG NPRAAFGGGF SDAYGGYGDS GYGVVAGPGP GPYRSGGPYG GRSSAFGGYS GGGMGGYGAY GGGGAYGGGF
301: REEASFGYSS RYGSGAFGRG YDVGGGYGGA GEGYGGYGAG GGGYGSGYGA AGLGSGYGGD SAGGSMYGSS RGSYGGAGAG SGRYHPYGR

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.