Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07154 | Soybean | nucleus | 96.26 | 96.77 |
| KRH56541 | Soybean | nucleus | 46.26 | 86.5 |
| KRG93213 | Soybean | nucleus | 82.62 | 81.96 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 73.8 | 73.4 |
| Solyc02g093340.2.1 | Tomato | nucleus | 64.44 | 61.95 |
| PGSC0003DMT400032811 | Potato | nucleus | 64.44 | 61.95 |
| AT5G40490.1 | Thale cress | nucleus | 65.78 | 58.16 |
| KRH17717 | Soybean | nucleus | 54.01 | 57.39 |
| CDY36357 | Canola | nucleus | 65.51 | 45.2 |
| Bra025568.1-P | Field mustard | nucleus | 65.51 | 44.95 |
| CDY42577 | Canola | nucleus | 65.24 | 44.77 |
| KRH23293 | Soybean | nucleus | 40.64 | 43.06 |
| KRH07772 | Soybean | cytosol | 10.7 | 40.82 |
| KRG98573 | Soybean | nucleus | 39.84 | 31.11 |
| KRH46297 | Soybean | nucleus | 39.57 | 30.9 |
| KRH74025 | Soybean | nucleus | 37.97 | 29.89 |
| KRG92276 | Soybean | endoplasmic reticulum | 37.97 | 29.83 |
| KRH34534 | Soybean | nucleus | 37.17 | 29.51 |
| KRH73860 | Soybean | nucleus | 37.17 | 29.14 |
| KRH14098 | Soybean | nucleus | 37.17 | 29.02 |
| KRH14284 | Soybean | nucleus | 36.9 | 28.87 |
| KRH13261 | Soybean | cytosol | 9.09 | 27.42 |
| KRH61448 | Soybean | nucleus | 27.81 | 27.08 |
| KRH52137 | Soybean | nucleus | 27.01 | 26.72 |
| KRH28467 | Soybean | cytosol | 24.33 | 24.93 |
| KRH77004 | Soybean | nucleus | 24.06 | 24.86 |
| KRH75298 | Soybean | cytosol, nucleus | 6.15 | 23.23 |
| KRH23771 | Soybean | nucleus | 15.78 | 21.69 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 18.18 | 20.99 |
| KRH40033 | Soybean | nucleus | 15.24 | 20.96 |
| KRH18921 | Soybean | nucleus | 14.97 | 20.29 |
| KRH16743 | Soybean | nucleus | 14.71 | 20.07 |
| KRH50169 | Soybean | nucleus | 20.59 | 20.05 |
| KRH60871 | Soybean | nucleus, plastid | 15.24 | 19.93 |
| KRH51553 | Soybean | nucleus, plastid | 15.24 | 19.93 |
| KRH47731 | Soybean | nucleus | 14.17 | 19.85 |
| KRH71299 | Soybean | nucleus | 20.32 | 19.79 |
| KRG95365 | Soybean | nucleus | 17.38 | 19.35 |
| KRH06306 | Soybean | nucleus | 13.9 | 19.33 |
| KRH67043 | Soybean | nucleus | 17.38 | 19.12 |
| KRH26210 | Soybean | nucleus | 21.93 | 18.76 |
| KRH55109 | Soybean | nucleus | 21.93 | 18.47 |
| KRH64318 | Soybean | nucleus | 12.57 | 18.29 |
| KRH62942 | Soybean | mitochondrion | 9.89 | 18.14 |
| KRH62327 | Soybean | nucleus | 13.64 | 17.77 |
| KRH53608 | Soybean | nucleus | 11.23 | 17.07 |
| KRH53044 | Soybean | nucleus | 12.83 | 16.72 |
| KRH14673 | Soybean | nucleus | 21.66 | 16.4 |
| KRH06384 | Soybean | nucleus | 12.83 | 15.95 |
| KRH73477 | Soybean | nucleus | 21.12 | 15.93 |
| KRH47819 | Soybean | nucleus | 12.57 | 15.88 |
| KRG94993 | Soybean | nucleus | 20.05 | 15.66 |
| KRH06373 | Soybean | nucleus | 11.5 | 15.52 |
| KRH47808 | Soybean | nucleus | 11.5 | 15.04 |
| KRH66628 | Soybean | nucleus | 19.52 | 15.02 |
Protein Annotations
| EntrezGene:100814490 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02011713 | EnsemblPlantsGene:GLYMA_19G061100 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1N727 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRG94084 | ProteinID:KRG94084 | ProteinID:KRG94084.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45276 | PANTHER:PTHR45276:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233EA16 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:-:12288526..12292871
Molecular Weight (calculated)
39100.7 Da
IEP (calculated)
6.976
GRAVY (calculated)
-0.698
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPPSNHHA VDGDANDVVR SFSHRDDDED GKPQPLTGDG ASPGKIFIGG LARETTIAQF IKHFGKYGEI TDSVIMKDRK TGQPRGFGFI TYADPSVVDT
101: VIEDTHIING KQVEIKRTIP RGAAGSNSKD FRTKKIFVGG IPSTVTEDEF RDFFTRYGEV KDHQIMRDHS TNRSRGFGFI TYDSEEAVDD LLSVGNKIEF
201: AGAQVEIKKA EPKKPNPPAP SSKRYNDSRS SYGGGYGDGY DGFGGNFGMG GYRSGGAYGG RGSAGAYGGF GSEFGGYGGY ASAMGPYRGD PSLGYAGRYG
301: GGYGRGYDLG GYGGPSDGYG AYGGVGGGSS GSAYGSSYDA SLGGGYGGPA GGSFYGTRGG YAGAGTGRYH PYGR
101: VIEDTHIING KQVEIKRTIP RGAAGSNSKD FRTKKIFVGG IPSTVTEDEF RDFFTRYGEV KDHQIMRDHS TNRSRGFGFI TYDSEEAVDD LLSVGNKIEF
201: AGAQVEIKKA EPKKPNPPAP SSKRYNDSRS SYGGGYGDGY DGFGGNFGMG GYRSGGAYGG RGSAGAYGGF GSEFGGYGGY ASAMGPYRGD PSLGYAGRYG
301: GGYGRGYDLG GYGGPSDGYG AYGGVGGGSS GSAYGSSYDA SLGGGYGGPA GGSFYGTRGG YAGAGTGRYH PYGR
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.