Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | KRH44644 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | KRH47009 | AT3G21215.1 | 21798944 |
| AT4G14300.1 | KRG90653 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | KRH36099 | AT2G16950.1 | 14756317 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92276 | Soybean | endoplasmic reticulum | 96.6 | 95.59 |
| KRH07772 | Soybean | cytosol | 16.14 | 77.55 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 75.58 | 76.72 |
| PGSC0003DMT400044195 | Potato | nucleus | 69.85 | 69.26 |
| Solyc09g090520.2.1 | Tomato | nucleus | 69.85 | 69.26 |
| PGSC0003DMT400035000 | Potato | nucleus | 62.42 | 66.52 |
| Solyc03g005680.2.1 | Tomato | nucleus | 60.3 | 66.51 |
| AT2G33410.1 | Thale cress | nucleus | 56.48 | 65.84 |
| AT4G14300.1 | Thale cress | nucleus | 56.9 | 65.21 |
| CDY12068 | Canola | nucleus | 48.83 | 64.25 |
| CDX79527 | Canola | nucleus | 55.2 | 64.04 |
| Bra021850.1-P | Field mustard | nucleus | 49.68 | 63.76 |
| CDY17173 | Canola | nucleus | 50.74 | 63.4 |
| Bra005496.1-P | Field mustard | nucleus | 50.53 | 63.3 |
| CDX84689 | Canola | nucleus | 54.56 | 62.99 |
| CDY23739 | Canola | nucleus | 51.17 | 62.92 |
| CDY37724 | Canola | nucleus | 43.1 | 62.85 |
| CDX90262 | Canola | nucleus | 50.96 | 62.83 |
| Bra022938.1-P | Field mustard | nucleus | 54.35 | 62.75 |
| Bra010757.1-P | Field mustard | nucleus | 50.74 | 62.57 |
| CDY67299 | Canola | nucleus | 50.32 | 62.2 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 51.17 | 59.65 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 55.41 | 57.74 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 55.41 | 57.49 |
| Zm00001d032739_P001 | Maize | nucleus | 53.93 | 57.34 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 55.2 | 57.27 |
| KXG38359 | Sorghum | nucleus | 54.99 | 57.17 |
| Zm00001d014058_P002 | Maize | plastid | 54.35 | 53.11 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 55.2 | 50.98 |
| KRG98573 | Soybean | nucleus | 42.46 | 41.75 |
| KRH46297 | Soybean | nucleus | 42.25 | 41.54 |
| KRH73860 | Soybean | nucleus | 41.4 | 40.88 |
| KRH74025 | Soybean | nucleus | 40.55 | 40.21 |
| KRH14284 | Soybean | nucleus | 40.55 | 39.96 |
| KRH14098 | Soybean | nucleus | 40.34 | 39.67 |
| KRH56541 | Soybean | nucleus | 16.56 | 39.0 |
| KRH07154 | Soybean | nucleus | 30.15 | 38.17 |
| KRG94084 | Soybean | nucleus | 29.51 | 37.17 |
| KRH17717 | Soybean | nucleus | 26.33 | 35.23 |
| KRH52137 | Soybean | nucleus | 28.03 | 34.92 |
| KRG93213 | Soybean | nucleus | 27.6 | 34.48 |
| KRH23293 | Soybean | nucleus | 25.69 | 34.28 |
| KRH61448 | Soybean | nucleus | 27.81 | 34.11 |
| KRH28467 | Soybean | cytosol | 22.72 | 29.32 |
| KRH77004 | Soybean | nucleus | 22.51 | 29.28 |
| KRH13261 | Soybean | cytosol | 7.43 | 28.23 |
| KRH75298 | Soybean | cytosol, nucleus | 5.73 | 27.27 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 18.05 | 26.23 |
| KRH40033 | Soybean | nucleus | 14.23 | 24.63 |
| KRH23771 | Soybean | nucleus | 14.01 | 24.26 |
| KRH60871 | Soybean | nucleus, plastid | 14.65 | 24.13 |
| KRH51553 | Soybean | nucleus, plastid | 14.65 | 24.13 |
| KRH18921 | Soybean | nucleus | 12.31 | 21.01 |
| KRH47731 | Soybean | nucleus | 11.68 | 20.6 |
| KRH16743 | Soybean | nucleus | 11.89 | 20.44 |
| KRH26210 | Soybean | nucleus | 18.9 | 20.37 |
| KRG95365 | Soybean | nucleus | 14.44 | 20.24 |
| KRH06306 | Soybean | nucleus | 11.46 | 20.07 |
| KRH55109 | Soybean | nucleus | 18.9 | 20.05 |
| KRH50169 | Soybean | nucleus | 16.14 | 19.79 |
| KRH67043 | Soybean | nucleus | 14.23 | 19.71 |
| KRH71299 | Soybean | nucleus | 15.92 | 19.53 |
| KRH64318 | Soybean | nucleus | 10.62 | 19.46 |
| KRH53608 | Soybean | nucleus | 9.98 | 19.11 |
| KRH06384 | Soybean | nucleus | 11.89 | 18.6 |
| KRH47819 | Soybean | nucleus | 11.46 | 18.24 |
| KRH62327 | Soybean | nucleus | 11.04 | 18.12 |
| KRH62942 | Soybean | mitochondrion | 7.64 | 17.65 |
| KRH53044 | Soybean | nucleus | 10.62 | 17.42 |
| KRH06373 | Soybean | nucleus | 9.98 | 16.97 |
| KRH47808 | Soybean | nucleus | 9.55 | 15.73 |
| KRG94993 | Soybean | nucleus | 14.44 | 14.2 |
| KRH14673 | Soybean | nucleus | 14.86 | 14.17 |
| KRH73477 | Soybean | nucleus | 14.86 | 14.11 |
| KRH66628 | Soybean | nucleus | 14.44 | 13.99 |
Protein Annotations
| EntrezGene:100811267 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02006607 | InterPro:DAZAP1_RRM2 | EnsemblPlantsGene:GLYMA_10G189500 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:K7LKA7 | EnsemblPlants:KRH34534 | ProteinID:KRH34534 | ProteinID:KRH34534.1 | ProteinID:KRH34535.1 | ProteinID:KRH34536.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000233D39C | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:42267022..42270765
Molecular Weight (calculated)
47555.7 Da
IEP (calculated)
7.740
GRAVY (calculated)
-0.703
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDQGKLFI GGISWDTTED KLKEHFGNYG DVLSTSVMRE KNTGKPRGFG FVVFADPNIL DRVLEDKHVI DGRTVDAKKA FSREDQQISV TSRGGNSNSG
101: MNSGNGGNIR TKKIFVGGLP PTLTEEKFRQ YFESYGNVTD VVVMYDQNTG RPRGFGFISF DTEDAVDRVL HKSFHDLNGK QVEVKRALPK DANPGASGRM
201: MGGAGGGGYQ GYGASGGNQN AYDGRMDSSR YMQPQSAAGG FPPYGSSAYS APGYGYGPAS NGIGYGAYGS YGGATAGYGG PAAATYGNPN VPNAAYAGGP
301: PGGPRSTWPA QAPSGYGSMG YGNTAAWGAP SGGAGSGGGG PGSATAGQSP GGAAGYGNQG YGYGGYGGYG GSDSSYGNSG AYGTVGGRTG SAPNNNASAS
401: GGSELTSSGG SGNYMGGGYG DANGNSGYGN AAWRSEQTHA SGNYGTPQGN GGQVGYGVGY GGAQSRQAQQ Q
101: MNSGNGGNIR TKKIFVGGLP PTLTEEKFRQ YFESYGNVTD VVVMYDQNTG RPRGFGFISF DTEDAVDRVL HKSFHDLNGK QVEVKRALPK DANPGASGRM
201: MGGAGGGGYQ GYGASGGNQN AYDGRMDSSR YMQPQSAAGG FPPYGSSAYS APGYGYGPAS NGIGYGAYGS YGGATAGYGG PAAATYGNPN VPNAAYAGGP
301: PGGPRSTWPA QAPSGYGSMG YGNTAAWGAP SGGAGSGGGG PGSATAGQSP GGAAGYGNQG YGYGGYGGYG GSDSSYGNSG AYGTVGGRTG SAPNNNASAS
401: GGSELTSSGG SGNYMGGGYG DANGNSGYGN AAWRSEQTHA SGNYGTPQGN GGQVGYGVGY GGAQSRQAQQ Q
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.