CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 18757068

msms PMID: 18757068 doi

NW Oehrle, AD Sarma, JK Waters, DW Emerich

United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92276
KRG94456
KRG98502
KRG98507
KRH07005
KRH07772
KRH29451
KRH29452
KRH29453
KRH29454
KRH34534
KRH44738
KRH46360
KRH46364
KRH51528
KRH60842
KRH68047

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	KRH29451	AT2G21660.1	14756317
AT2G16950.1	KRH29452	AT2G21660.1	14756317
AT2G16950.1	KRH29453	AT2G21660.1	14756317
AT2G16950.1	KRH29454	AT2G21660.1	14756317
AT2G16950.1	KRH51528	AT2G21660.1	14756317
AT2G16950.1	KRH60842	AT2G21660.1	14756317
AT2G16950.1	KRG92276	AT4G14300.1	14756317
AT2G16950.1	KRH07772	AT4G14300.1	14756317
AT2G16950.1	KRH34534	AT4G14300.1	14756317
AT2G16950.1	KRG98502	AT4G26630.1	25387881
AT2G16950.1	KRG98507	AT4G26630.1	25387881
AT2G16950.1	KRH46360	AT4G26630.1	25387881
AT2G16950.1	KRH46364	AT4G26630.1	25387881
AT2G16950.1	KRG94456	AT5G27080.1	20706207
AT2G16950.1	KRH07005	AT5G27080.1	20706207
AT2G16950.1	KRH44738	AT5G27080.1	20706207
AT2G16950.1	KRH68047	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36099	Soybean	cytosol	97.66	97.98
VIT_03s0038g02830.t01	Wine grape	cytosol	85.6	85.6
Solyc01g111780.2.1	Tomato	nucleus, plastid	81.58	82.13
GSMUA_Achr4P16360_001	Banana	cytosol	45.2	76.85
EES11709	Sorghum	cytosol	75.22	75.82
Bra002011.1-P	Field mustard	cytosol	74.44	75.71
AT2G16950.1	Thale cress	cytosol	75.56	75.64
CDY47482	Canola	cytosol	74.44	75.54
CDY31391	Canola	cytosol	74.22	75.4
Bra013038.1-P	Field mustard	cytosol	74.11	75.37
CDY02225	Canola	cytosol	74.11	75.28
Bra037286.1-P	Field mustard	cytosol	74.89	74.97
Zm00001d002936_P010	Maize	cytosol	74.55	74.97
HORVU2Hr1G126610.7	Barley	cytosol	73.44	74.43
Os04t0691500-01	Rice	cytosol, plasma membrane	63.5	74.09
CDX89768	Canola	cytosol	72.21	73.94
TraesCS2A01G562500.1	Wheat	golgi	74.0	73.91
TraesCS2B01G624100.1	Wheat	cytosol	74.0	73.91
TraesCS2D01G572700.1	Wheat	cytosol	74.0	73.91
Zm00001d026696_P005	Maize	cytosol	73.1	73.6
CDY26791	Canola	cytosol	10.38	72.66
CDY26790	Canola	cytosol	9.38	71.19
CDY71774	Canola	cytosol	22.43	71.02
CDY54431	Canola	cytosol	74.78	56.07
AT2G16953.1	Thale cress	cytosol	3.91	54.69
AT2G16960.1	Thale cress	cytosol	32.48	52.72
Bra010184.1-P	Field mustard	cytosol, mitochondrion	16.63	48.85
TraesCS2B01G426000.1	Wheat	cytosol	16.52	40.66
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	38.84	35.47
KRH64395	Soybean	peroxisome	17.08	19.69
KRH41369	Soybean	cytosol, endoplasmic reticulum, nucleus	18.86	19.43
KRH53541	Soybean	cytosol	18.86	19.4
KRH60084	Soybean	cytosol, endoplasmic reticulum, nucleus	18.75	19.31
Os04t0691600-02	Rice	plastid	1.0	6.21

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100792702	MapMan:23.5.1.2.2	EMBL:ACUP02012629	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:GLYMA_20G106300	GO:GO:0000060	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0006607	GO:GO:0006610	GO:GO:0006810	GO:GO:0006886	GO:GO:0008139	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	GO:GO:0016020	GO:GO:0031965	GO:GO:0034399	InterPro:HEAT
UniProt:I1NF81	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	EnsemblPlants:KRG90653	ProteinID:KRG90653
ProteinID:KRG90653.1	PFAM:PF02985	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527
PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI000233DB7C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:34867641..34883992

Molecular Weight (calculated)

99682.0 Da

IEP (calculated)

4.723

GRAVY (calculated)

0.012

Length

896 amino acids

Sequence
(BLAST)

001: MAAAAATTPS WQPQEQGFKE ICGLLEQQIS HSSSADKAQI WQHLQRYSHL PDFNNYLAFI FSRAEGKSVE VRQAAGLYLK NNLRNTFKSM QPAYQQYVKS
101: ELLPCLGATD KHIRSTAGTI ISVVVQIGGV VGWPELLQAL VNCLDSNDLN HMEGAMDALS KICEDIPQYL DSDVPGLAER PINIFLPRLF RFFQSPHASL
201: RKLSLGSVNQ YIMLMPSALY VSMDQYLQGL FILANDAAAE VRKLVCAAFV QLIEVRPSFL EPHLRNVIEY MLQVNKDTDD EVALEACEFW SAYCDAQLPP
301: ENLREFLPRL IPVLLSNMAY ADDDESVIEA EEDGSQPDRD QDLKPRFHVS RFHGSDEVED DDDDVVNTWN LRKCSAAALD ILSNVFGDEI LPTLMPIVEA
401: KLSAGGDDAW KDREAAVLAL GAIGEGCING LYPHLLEIVA FLIPLLDDKF PLIRSISCWT LSRFSKFIVQ GIGHPKGYEQ FDNVLMGLLR RILDDNKRVQ
501: EAACSAFATL EEEAAEELAP RLEIILKHLM TAFGKYQRRN LRIVYDAIGT LAEAVGGELN QPVYLDILMP PLIEKWQQLS NSDKDLFPLL ECFTSIAHAL
601: GTGFAQFAEP VFRRCINIIQ TQQFAKADPA ATTGVQYDKE FIVCSLDLLS GLAEGLGSGI ESLVAQCSLR DLLLHCCVDD APDVRQSAFA LLGDLARVCP
701: VHLHPRLSEF LEAAAKQLEI SKVKEAISVA NNACWAIGEL AVKVRQEISP IVLTVISCLV PILQHAEGLN KSLIENSAIT LGRLAWVCPE LVSPHMEHFM
801: QSWCTALSMI RDDVEKEDAF RGLCAMVKAN PSGALSSLVY MCKAIASWHE IRSEDLHNEV CQVLHGYKQM LRNGAWDQCM SALEPPVKEK LSKYQV

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.