CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60084	Soybean	cytosol, endoplasmic reticulum, nucleus	99.08	99.08
GSMUA_Achr1P28070_001	Banana	cytosol	80.92	83.81
GSMUA_Achr3P25220_001	Banana	cytosol	76.78	83.4
Os12t0568800-01	Rice	plasma membrane	66.78	82.65
KRH53541	Soybean	cytosol	81.26	81.17
EES16185	Sorghum	cytosol	81.15	80.96
TraesCS5D01G095100.1	Wheat	golgi	81.03	80.85
HORVU5Hr1G021580.1	Barley	cytosol	81.03	80.85
TraesCS5D01G094600.1	Wheat	cytosol	81.03	80.85
TraesCS5B01G088700.1	Wheat	cytosol	81.03	80.85
TraesCS5A01G077200.1	Wheat	golgi	81.03	80.85
TraesCS5A01G082600.1	Wheat	golgi	81.03	80.85
TraesCS5B01G088400.1	Wheat	cytosol	80.69	80.5
HORVU5Hr1G021530.2	Barley	cytosol	80.34	79.52
KRH64395	Soybean	peroxisome	70.92	79.41
GSMUA_Achr5P09570_001	Banana	cytosol	21.49	77.27
Zm00001d041556_P002	Maize	cytosol	80.23	70.72
GSMUA_Achr5P09580_001	Banana	cytosol	28.16	65.51
Zm00001d030694_P002	Maize	mitochondrion	79.77	64.62
KRG90653	Soybean	cytosol	19.43	18.86
KRH36099	Soybean	cytosol	19.31	18.81

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100818831	MapMan:23.5.1.2.1	EMBL:ACUP02004761	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:GLYMA_08G025600	GO:GO:0000060	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0006607	GO:GO:0006610	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008139
GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	GO:GO:0016020	GO:GO:0031965	GO:GO:0034399
UniProt:I1KPN2	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	InterPro:KPNB1_plant	EnsemblPlants:KRH41369
ProteinID:KRH41369	ProteinID:KRH41369.1	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527
PANTHER:PTHR10527:SF44	SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI0001D646EA	:	:

Description

hypothetical protein

Coordinates

chr8:-:2021102..2025921

Molecular Weight (calculated)

96383.4 Da

IEP (calculated)

4.400

GRAVY (calculated)

-0.061

Length

870 amino acids

Sequence
(BLAST)

001: MAMEVTQILL NAQAVDGTLR KQAEESLKQF QEQNLPSFLF SLAGELANDE KPAESRKLAG LILKNALDAK EQHRKIEFVQ RWLSLDPTLK AQIKAFLLRT
101: LSSPSLDARS TASQVIAKVA GIELPHKQWP ELIGSLLSNA HQLPAPTRQA TLETLGYICE EVSPDVVDQD HVNKILTAVV QGMNSTEENN DVRLAAIKAL
201: YNALGFAQAN FSNDMERDYI MRIVCETTQS PELKIRRAAF ECLVAISSTY YEKLAPYIQD IFNITAKAVR EDEEPVALQA IEFWSSICDE EIDILEEYGG
301: DFSGDSEVPC FYFIKQALSF LVPMLLETLL KQEEDQDQDE GAWNIAMAGG TCLGLVARTV GDDIVPLVMP FIEENITKPD WRQREAATYA FGSILEGPSP
401: DKLVPLVNMA LNFMLTALMK DPNNHVKDTT AWTLGRMFEF LHGSALDTPI ITPANCQQII TVLLQSMKDV PNVAEKACGA LYFLAQGYED AGSASSPLTP
501: FFQEIVHALL TVTHREDAGE SRLRTAAYEA LNEVVRCSND ETAPMVVQLV PLIMMELHQT LENQKVSSDE RQNELQGLLC GCLQVIIQKL GSSEPTKYHF
601: MQYADQIMGL FLRVFASRSA TAHEEAMLAI GALAYATGAD FAKYMTEFYK YLEMGLQNFE DYQVCAITVG VVGDVCRALE EKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGENFEKYL LYAMPMLQSA AELSAHTSGA DDDMTEYTNS LRNGILEAYS GIFQGFKGSP KTQLLMPYAP HVLQFLDSLY
801: NEKDMDDVVT KTAIGVLGDL ADTLGSNAGP LIQQSVSSKD FLKECLSSDD HLIKESAEWA KLAISRAISF

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.