Factsheet for GSMUA_Achr1P28070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25220_001	Banana	cytosol	85.83	90.01
PGSC0003DMT400047662	Potato	cytosol	86.43	83.35
Os12t0568800-01	Rice	plasma membrane	69.29	82.79
PGSC0003DMT400050414	Potato	cytosol	85.24	82.49
TraesCS5A01G077200.1	Wheat	golgi	85.48	82.34
TraesCS5D01G094600.1	Wheat	cytosol	85.36	82.22
HORVU5Hr1G021580.1	Barley	cytosol	85.24	82.11
TraesCS5A01G082600.1	Wheat	golgi	85.12	82.0
TraesCS5B01G088700.1	Wheat	cytosol	85.12	82.0
TraesCS5D01G095100.1	Wheat	golgi	85.0	81.88
TraesCS5B01G088400.1	Wheat	cytosol	84.88	81.77
HORVU5Hr1G021530.2	Barley	cytosol	85.36	81.57
EES16185	Sorghum	cytosol	84.52	81.42
GSMUA_Achr5P09570_001	Banana	cytosol	23.45	81.41
KRH41369	Soybean	cytosol, endoplasmic reticulum, nucleus	83.81	80.92
KRH60084	Soybean	cytosol, endoplasmic reticulum, nucleus	83.45	80.57
Solyc06g052030.2.1	Tomato	plastid	74.88	80.33
CDY35657	Canola	cytosol	81.79	79.15
CDY14379	Canola	cytosol	81.67	79.03
Bra003054.1-P	Field mustard	cytosol	81.55	78.92
AT5G53480.1	Thale cress	cytosol	80.95	78.16
KRH53541	Soybean	cytosol	80.36	77.5
VIT_16s0098g01630.t01	Wine grape	plastid	87.38	77.26
KRH64395	Soybean	peroxisome	71.19	76.96
Solyc03g082940.2.1	Tomato	plastid	86.31	76.0
GSMUA_Achr5P09580_001	Banana	cytosol	32.86	73.8
Zm00001d041556_P002	Maize	cytosol	83.57	71.12
Zm00001d030694_P002	Maize	mitochondrion	83.81	65.55
GSMUA_Achr5P28110_001	Banana	cytosol	61.79	61.71
GSMUA_Achr8P01910_001	Banana	cytosol	58.69	61.39
GSMUA_Achr10P...	Banana	cytosol	61.07	61.0
GSMUA_Achr8P34170_001	Banana	cytosol	20.48	19.3
GSMUA_Achr4P16350_001	Banana	cytosol	6.67	18.06
GSMUA_Achr4P16360_001	Banana	cytosol	10.95	17.46

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008150	GO:GO:0008536	GO:GO:0008565
EnsemblPlantsGene:GSMUA_Achr1G28070_001	EnsemblPlants:GSMUA_Achr1P28070_001	EnsemblPlants:GSMUA_Achr1T28070_001	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N
InterPro:KPNB1_plant	UniProt:M0S3R4	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527
PANTHER:PTHR10527:SF44	SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI000294CF3F	SEG:seg	:

Description

Putative Importin subunit beta-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G28070_001]

Coordinates

chr1:+:26996095..26998847

Molecular Weight (calculated)

92953.8 Da

IEP (calculated)

4.501

GRAVY (calculated)

-0.041

Length

840 amino acids

Sequence
(BLAST)

001: MEVTQILLNA QSVDGTVRKH AEESLKQFQE QNFPTFLLSL SSELANNDKP VDSRKLAGLI LKNALDAKEQ HRKNELVQRW LSLDVAVKAQ VKACLLQTLS
101: SPVPDARSTA SQVIAKIAGI ELPQKQWPEL IGSLLSNIHQ LQPHVKQATL ETLGYICEEV SPQVVDQDQV NKILTAVVQG MNASEGSTDV RLAATRALYN
201: ALGFAQANFS NDMERDYIMR VVCEATLCPE LKIRQAAFEC LVAISSTYYD KLASYMQDIF SITAKAVRED EEPVALQAIE FWSSISLPAL IPMLLETLLK
301: QEEDQDQDEG AWNLAMAGGT CLGLVARTVG DDIVPLVMPF IEENINKPDW RQREAATYAF GSILEGPSPE KLIPLVNVAL NFMLSALMKD PNNHVKDTTA
401: WTLGRIFEFL HGSTVETPII THENCQLILT VLLQSMKDVP NVAEKACGAL YFLAQGYEDV SSGSPMSPLF QELIQALLNV THREDARESR LRTAAYETLN
501: EVVRTSTDET APIVTQLLPV IMMELHQTLE AQKLSSDERE KQNELQGLLC GCLQVIIQKL GASEATKYAF MQYADQIMEP FLRVFASRNA TVHEEAMLAV
601: GALAYAVGGN FIKYMQGFYP YLEMGLQNFQ EYQVCAITVG VVGDLCRALE DKILPYCDGI MTQLLKDLSS NQLHRSVKPP IFSCLGDIAL ATGENFEKYL
701: IYAMPMLQSA AELSAHAVAT DDEMLEYTNQ LRNGILEAYS GILQGFKNSS KTQLLMRYAP HILQFLDTLY NEKDMDDAVM KTAVGVLGDL ADTLGSHAGT
801: LINQSVASKE FLEECLSSDD QLIKESADWA KLAISRAISG

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.