Factsheet for Solyc06g052030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050414	Potato	cytosol	97.19	87.67
Os12t0568800-01	Rice	plasma membrane	75.22	83.78
CDY35657	Canola	cytosol	85.31	76.96
CDY14379	Canola	cytosol	85.19	76.84
Bra003054.1-P	Field mustard	cytosol	85.06	76.73
GSMUA_Achr5P09570_001	Banana	cytosol	23.63	76.45
AT5G53480.1	Thale cress	cytosol	83.91	75.52
GSMUA_Achr1P28070_001	Banana	cytosol	80.33	74.88
GSMUA_Achr3P25220_001	Banana	cytosol	76.5	74.78
VIT_16s0098g01630.t01	Wine grape	plastid	90.55	74.63
Solyc03g082940.2.1	Tomato	plastid	90.04	73.9
TraesCS5A01G077200.1	Wheat	golgi	82.12	73.74
EES16185	Sorghum	cytosol	81.86	73.51
TraesCS5A01G082600.1	Wheat	golgi	81.86	73.51
TraesCS5B01G088700.1	Wheat	cytosol	81.86	73.51
TraesCS5D01G094600.1	Wheat	cytosol	81.86	73.51
TraesCS5D01G095100.1	Wheat	golgi	81.86	73.51
HORVU5Hr1G021580.1	Barley	cytosol	81.74	73.39
KRH53541	Soybean	cytosol	81.48	73.25
TraesCS5B01G088400.1	Wheat	cytosol	81.48	73.17
HORVU5Hr1G021530.2	Barley	cytosol	81.48	72.58
KRH64395	Soybean	peroxisome	69.48	70.01
GSMUA_Achr5P09580_001	Banana	cytosol	32.06	67.11
Zm00001d041556_P002	Maize	cytosol	81.74	64.84
Zm00001d030694_P002	Maize	mitochondrion	80.33	58.57
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	64.24	50.25
Solyc01g111780.2.1	Tomato	nucleus, plastid	19.41	17.08

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000060	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005737	GO:GO:0006607	GO:GO:0006610	GO:GO:0006810	GO:GO:0006913
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0016020	GO:GO:0031965	GO:GO:0034399
InterPro:IPR011989	UniProt:K4C5Y9	InterPro:KPNB1_plant	PFAM:PF13513	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44
SUPFAM:SSF48371	EnsemblPlantsGene:Solyc06g052030.2	EnsemblPlants:Solyc06g052030.2.1	UniParc:UPI0002767296	:	:

Description

No Description!

Coordinates

chr6:-:35682289..35685209

Molecular Weight (calculated)

86728.0 Da

IEP (calculated)

4.250

GRAVY (calculated)

-0.014

Length

783 amino acids

Sequence
(BLAST)

001: MLWMPRNNTG NMNSSKDALD ARSTASQVIA KVAGIELPQK QWPELIGSLL SNQQLPAHVK QATLETLGYL CEEVSPDVME QDQVNKILTA VIQGMNAEER
101: NNDVRLAATR ALYNALGFAQ ANFTNDMERD FIMRVVCQAT LSPEVKIRQA AFECLVSISS TYYEKLAPYI QDIFNITAKA VREDEEPVAL QAIEFWSSIC
201: DEEIDILEDY GGDFTADSDV PCYNFIKQAL PALVPMLLET LLKQEEDQDQ DEVAWNLAMA GGTCLGLVAR TVGDDIVPLV MPFIEENITK PDWRQREAAT
301: YAFGSILEGP SPDKLMPIVN SALNFMLTAL TKDANSHVKD TTAWTLGRIF EFLHGSTVEI PIITPTNCQQ IITVLLQSMK DAPNVAEKAC GALYFLAQGY
401: GDVAASSPLT PFFQEMVQSL LTATHREDAG ESRLRTAAYE ALNEVVRCST DETTPMVLQL VPVIMMELHQ TLEAQKLSSD EREKQSELQG LLCGCLQVII
501: QKLGSSEQTK YAFSQYADQI MSLFLRVFAC RSATVHEEAM LSIGALAYAT APDFAKYMHE FYKYLEMGLQ NFEEYQVCAV TVGVVGDLCR ALEDKILPYC
601: DGIMTQLLKD LSSNQLHRSV KPPIFSCFGD IALAIGENFE KYLMYAMPML QSAAELSARA TGADDEILDY TNLLRNGILE AYSGIFQGFK NSPKTQLLIP
701: YAPHILQFLD SIYMEKDMDD VVMKTAIGVL GDLADTLGSN AGSLIQQSVS SKDFLIECLS SDDHLIKESA EWAQMAISRA ISV

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.