Factsheet for TraesCS5D01G095100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G088700.1	Wheat	cytosol	99.89	99.89
TraesCS5A01G082600.1	Wheat	golgi	99.77	99.77
HORVU5Hr1G021580.1	Barley	cytosol	99.31	99.31
TraesCS5D01G094600.1	Wheat	cytosol	96.9	96.9
Os12t0568800-01	Rice	plasma membrane	75.92	94.17
EES16185	Sorghum	cytosol	94.15	94.15
GSMUA_Achr3P25220_001	Banana	cytosol	78.9	85.89
GSMUA_Achr1P28070_001	Banana	cytosol	81.88	85.0
PGSC0003DMT400047662	Potato	cytosol	82.91	83.01
PGSC0003DMT400050414	Potato	cytosol	82.0	82.37
Zm00001d041556_P002	Maize	cytosol	92.89	82.07
Solyc06g052030.2.1	Tomato	plastid	73.51	81.86
KRH41369	Soybean	cytosol, endoplasmic reticulum, nucleus	80.85	81.03
KRH60084	Soybean	cytosol, endoplasmic reticulum, nucleus	80.16	80.34
CDY35657	Canola	cytosol	79.13	79.49
CDY14379	Canola	cytosol	79.01	79.38
Bra003054.1-P	Field mustard	cytosol	78.9	79.26
AT5G53480.1	Thale cress	cytosol	78.9	79.08
GSMUA_Achr5P09570_001	Banana	cytosol	21.79	78.51
KRH53541	Soybean	cytosol	77.87	77.96
KRH64395	Soybean	peroxisome	68.92	77.35
VIT_16s0098g01630.t01	Wine grape	plastid	83.94	77.05
Solyc03g082940.2.1	Tomato	plastid	82.8	75.68
Zm00001d030694_P002	Maize	mitochondrion	92.43	75.05
GSMUA_Achr5P09580_001	Banana	cytosol	28.78	67.11
TraesCS1D01G224400.2	Wheat	golgi	61.81	62.1
TraesCS1D01G066600.1	Wheat	cytosol	59.75	59.34
TraesCS4D01G193700.1	Wheat	endoplasmic reticulum	56.31	55.67
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	29.59	39.57
TraesCS5D01G042900.2	Wheat	cytosol	38.19	39.5
TraesCS2D01G434400.1	Wheat	cytosol	21.33	37.58
TraesCS5D01G022500.1	Wheat	cytosol	29.93	36.76
TraesCS5D01G057000.1	Wheat	cytosol	36.81	36.19
TraesCS2D01G341200.1	Wheat	cytosol	34.17	33.41
TraesCS2D01G480800.1	Wheat	cytosol	33.6	32.52
TraesCS2D01G480100.1	Wheat	cytosol	33.03	30.97
TraesCS2D01G572700.1	Wheat	cytosol	19.15	18.62

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N
InterPro:KPNB1_plant	PFAM:PF02985	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527
PANTHER:PTHR10527:SF44	SMART:SM00913	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS5D01G095100	EnsemblPlants:TraesCS5D01G095100.1	SEG:seg

Description

No Description!

Coordinates

chr5D:-:104469879..104473742

Molecular Weight (calculated)

95883.8 Da

IEP (calculated)

4.372

GRAVY (calculated)

-0.016

Length

872 amino acids

Sequence
(BLAST)

001: MSLDVTQILL SAQSADGSIR KHAEESLKQF QEQNLPGFLL SLSTELATNE KPEESRRLAG LILKNALDAK EQHRKNELFQ RWLALDAGVK AQVKALLLQT
101: LSSPVASARS TSSQVIAKIA GIEIPQKQWP ELIGSLLSNI HQVQPNVKQA TLETLGYLCE EVSPEAVDQD QVNKILTAVV QGMNASEGNS EVRLAATRAL
201: YNALGFAQVN FSNDMERDYI MRVVCEATQS PDVKIRQAAF ECLVAISSTY YDKLATYMQD IFNITAKAVR GDEESVALQA MEFWSSICDE EIDILDEYSS
301: EFTADSDVPC YYFIKQALPA LVPMLLETLL KQEDDQDLDE GAWNLAMAGG TCLGLVARTV GDDIVPLVMP FVEENITKPE WRHREAATYA FGSILEGPSA
401: DKLTPLVNVA LNFMLSALVK DPNNHVKDTT AWTLGRIFEF LHGSALETAP VITAENCQQI LTVLLQSMKD VPNVAEKACG ALYFLAQGYV DAGSASPLSP
501: FFQDIVQSLL VTSHREDAGE SRLRTAAYET LNEVVRCSTE ETAPIVMQLV PVIMMELHNT LEAGKLSTDE REKRSDLQGL LCGCLQVIIQ KLGGMESTKF
601: AFLQYADQMM DLFLRVFACR NATVHEEAML AIGALAYAAG SSFAKYMAQF YQYLEMGLQN FEEYQVCAIT VGVVGDLCRA LEDKILPYCD GIMTQLLKDL
701: SSNQLHRSVK PPIFSCFGDI ALAIGENFEK YLIYAMPMLQ SAADLSAHTT ATDDEMLDYT NQLRNGILEA YSGILQGFKS SPKTQLLMPY APHILQFLDA
801: LHNGKDMDDS VMKTAIGVLG DLADTLGVNA GPLINQSTSS KQFLDECLSS DDPLVKESAD WARIAISRAV SG

Best Arabidopsis Sequence Match ( AT3G08947.1 )
(BLAST)

001: MERNYIMKMV CETACSKEAE IRQAAFECLV SIASTYYEVL EHYIQTLFEL TSNAVKGDEE SVSLQAIEFW SSICDEEIDR QEYDSPASGD SSPPHSSFIE
101: KALPHLVQML LETLLKQEED QDHDDDVWNI SMAGGTCLGL VARTVGDHVV PLVMPFVEKN ISSPDWRCRE AATYAFGSIL EGPTIDKLAP MVAAGLEFLL
201: NATKDQNNHV RDTTAWTLSR IFEFLHSPDS GFSVISPENL PRIVSVLLES IKDVPNVAEK VCGAIYNLAQ GYEDSGASSS LLSPYLTEII THLLAAAERT
301: DGAESKLRGA AYETLNEVVR CSNLSEASSI IAHLLPAIMK KLAETMDLPI ISTDDREKQA EVQASLCGVL QVIIQKLSGR EDTKPIIMQS ADDIMRLFLR
401: VFGCHSSSVH EEAMLAIGAL AYATGAEFVK YMPELFKYLQ MGLQNFEEYQ VCSITVGVLG DICRALDEKI LPFCDQIMGL LIQNLQSGAL HRSVKPPIFS
501: CFGDIALAIG AHFERYVAPA VQIMQGAAQV CAQMDTLDEE LMDYANQLRR SIFEAYSGIL QGFKDTKAEL MMPYAQHLLQ FVELVSKDPL RDESVTKAAV
601: AAMGDLADVV GENTKQLFQN FTFFGEFLNE CLESEDEDLK VTARWTQGMI ARLMHPS

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WML1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.